NTDB

Overview

Name	comYH	Type	Machinery gene
Locus tag	V7A40_RS08700	Genome accession	NZ_CP146750
Coordinates	1704058..1704993 (-)	Length	311 a.a.
NCBI ID	WP_014025404.1	Uniprot ID	A0A6L2ZWA9
Organism	Lactococcus garvieae strain L2
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1699058..1709993

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V7A40_RS08675 (V7A40_08675)	-	1699106..1699966 (-)	861	WP_014025402.1	S1 RNA-binding domain-containing protein	-
V7A40_RS08680 (V7A40_08680)	frr	1700074..1700631 (-)	558	WP_003133324.1	ribosome recycling factor	-
V7A40_RS08685 (V7A40_08685)	pyrH	1700661..1701377 (-)	717	WP_003133322.1	UMP kinase	-
V7A40_RS08690 (V7A40_08690)	-	1701468..1702661 (-)	1194	WP_003133320.1	acetate kinase	-
V7A40_RS08695 (V7A40_08695)	-	1702780..1703973 (-)	1194	WP_014025403.1	acetate kinase	-
V7A40_RS08700 (V7A40_08700)	comYH	1704058..1704993 (-)	936	WP_014025404.1	class I SAM-dependent methyltransferase	Machinery gene
V7A40_RS08705 (V7A40_08705)	-	1705039..1705269 (-)	231	WP_003133314.1	DUF3165 family protein	-
V7A40_RS08710 (V7A40_08710)	typA	1705344..1707185 (-)	1842	WP_003133313.1	translational GTPase TypA	-
V7A40_RS08715 (V7A40_08715)	-	1707506..1707718 (+)	213	WP_003133311.1	YqgQ family protein	-
V7A40_RS08720 (V7A40_08720)	-	1707711..1708676 (+)	966	WP_341785199.1	ROK family glucokinase	-
V7A40_RS08725 (V7A40_08725)	-	1708696..1709076 (+)	381	WP_003133308.1	rhodanese-like domain-containing protein	-
V7A40_RS08730 (V7A40_08730)	-	1709116..1709562 (-)	447	WP_003133306.1	DNA starvation/stationary phase protection protein	-

Sequence

Protein

Download Length: 311 a.a. Molecular weight: 35138.19 Da Isoelectric Point: 4.6737

                                >NTDB_id=944158 V7A40_RS08700 WP_014025404.1 1704058..1704993(-) (comYH) [Lactococcus garvieae strain L2]

MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV

APMQANHNLTPDSIGFIFNFIIEELHKERKIRVLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE

ASFLQIDAVKPQPLESVDVVMSDLPVGYYPDDETARHFQVHDKSEHTYVHHLMIEQSFKYLKESGFALFLAPDNLLTSAQ

SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLADLADRSILQEFMSEFVKNVKI

Nucleotide

Download Length: 936 bp

                                >NTDB_id=944158 V7A40_RS08700 WP_014025404.1 1704058..1704993(-) (comYH) [Lactococcus garvieae strain L2]

ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTGGTTCTTGAAAATATTATGGCAATTCAAGCGGAGCTCTTGACGGA

TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAGTTTGCATCTCTGACGAAGGAAAATAATG

ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAGTGGCAAAAGCTGTTTCAGTTTGTCTTGCTTCAAGGGTCACGTGTC

GCACCAATGCAAGCAAATCATAATTTAACACCAGATTCTATTGGGTTTATCTTTAATTTTATCATTGAAGAGTTGCACAA

AGAAAGAAAGATTCGTGTACTAGAATTTGGCTCAGGAACAGGGAATTTAGCGGAAACGCTCTTGGTTCACATGCAAAAAG

AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA

GCAAGTTTTCTCCAAATTGACGCCGTGAAACCACAGCCCTTGGAGTCTGTAGATGTTGTGATGAGTGATCTCCCGGTTGG

TTATTATCCAGACGATGAAACTGCTCGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCACTTAATGA

TTGAGCAATCCTTTAAGTATCTGAAGGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG

TCAGAATTTTTGAAGGCTTGGATTAAAGAACATGCACATGTTGCTGCAGTCATTACATTGCCTTCGTCACTCTTTAAAGG

TGCAGGAAAATCGATTTATTTATTAAGTAAAAACCAAACAAATACACCAACTTTTGTTTACCCCTTGGCTGATTTAGCAG

ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTCAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(132-286)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A6L2ZWA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492

Detailed information NTG0944158