Detailed information NTG0944129

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: V7A40_RS00975
• Genome accession: NZ_CP146750
• Coordinates: 181862..183223 (+)
• Length: 453 a.a.
• NCBI ID: WP_080567145.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain L2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 176862..188223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V7A40_RS00930 (V7A40_00930)	-	177325..178047 (-)	723	WP_003133770.1	metal ABC transporter ATP-binding protein	-
V7A40_RS00935 (V7A40_00935)	-	178069..178512 (-)	444	WP_014024192.1	zinc-dependent MarR family transcriptional regulator	-
V7A40_RS00940 (V7A40_00940)	infA	178714..178932 (+)	219	WP_003133772.1	translation initiation factor IF-1	-
V7A40_RS00945 (V7A40_00945)	rpmJ	178986..179102 (+)	117	WP_014024193.1	50S ribosomal protein L36	-
V7A40_RS00950 (V7A40_00950)	rpsM	179120..179485 (+)	366	WP_003133773.1	30S ribosomal protein S13	-
V7A40_RS00955 (V7A40_00955)	rpsK	179503..179886 (+)	384	WP_003133774.1	30S ribosomal protein S11	-
V7A40_RS00960 (V7A40_00960)	-	179938..180876 (+)	939	WP_003133775.1	DNA-directed RNA polymerase subunit alpha	-
V7A40_RS00965 (V7A40_00965)	rplQ	180892..181272 (+)	381	WP_003133776.1	50S ribosomal protein L17	-
V7A40_RS00975 (V7A40_00975)	radA	181862..183223 (+)	1362	WP_080567145.1	DNA repair protein RadA	Machinery gene
V7A40_RS00980 (V7A40_00980)	-	183357..184433 (+)	1077	WP_014024194.1	PIN/TRAM domain-containing protein	-
V7A40_RS00985 (V7A40_00985)	-	184456..185085 (+)	630	WP_023889409.1	pyridoxamine 5'-phosphate oxidase family protein	-
V7A40_RS00990 (V7A40_00990)	ald	185273..186394 (+)	1122	WP_014024196.1	alanine dehydrogenase	-
V7A40_RS00995 (V7A40_00995)	-	186429..186923 (-)	495	WP_014024197.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 49768.92 Da
• Isoelectric Point: 4.8676

>NTDB_id=944129 V7A40_RS00975 WP_080567145.1 181862..183223(+) (radA) [Lactococcus garvieae strain L2]
MAKKKSTFLCQECGYKSVKKLGRCPNCGAWGSFVEEVEVQEVKNQRVSLTGEHSKPMKLDQVELFDTPRVETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDTDFYLYAETNMQSIRNEVE
RLQPDFLIVDSIQTIMTPEIQSTQGSVSQVREVTGELMQLAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
QNTFRILRAVKNRFGSTNEIGIFEMQGNGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRAGFLLQQQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEEPTDARECFIGEIGLTGEIR
RVTRMEQRLNEASKLGFQKVYAPKNSLAGVDIPENLEVVGVTTLSECLKKVFG

Nucleotide

• Length: 1362 bp

>NTDB_id=944129 V7A40_RS00975 WP_080567145.1 181862..183223(+) (radA) [Lactococcus garvieae strain L2]
ATAGCTAAAAAAAAATCAACATTTCTTTGCCAGGAATGTGGCTACAAATCAGTAAAAAAACTCGGACGTTGTCCCAATTG
TGGTGCTTGGGGTTCCTTTGTTGAAGAAGTAGAAGTCCAAGAGGTAAAAAATCAGAGAGTGAGTCTGACAGGCGAGCACT
CTAAGCCCATGAAGTTAGATCAGGTTGAACTTTTCGATACACCGCGTGTGGAAACTGATCTGGATGAGTTTAACCGCGTC
CTTGGAGGCGGTGTCGTTCCAGGAAGTCTTGTCCTTATTGGGGGGGATCCAGGGATTGGTAAATCTACTCTACTGCTTCA
AGTATCTACGCAACTTGCTTCAAGAGGGCGTGTACTTTATGTCAGTGGGGAGGAGTCGGCTCAACAAATTAAGCTGCGTG
CCGAGCGTTTGGGCGACATCGATACAGATTTTTACCTTTACGCCGAAACCAATATGCAAAGCATCCGAAATGAAGTTGAA
CGTCTACAGCCAGACTTTCTTATTGTAGATTCGATTCAAACTATCATGACGCCTGAAATCCAGAGTACTCAGGGTTCGGT
TAGTCAGGTGCGCGAGGTGACAGGAGAATTAATGCAGTTGGCCAAAACCAACGATATTGCGACCTTTATTGTCGGACATG
TCACTAAGGAAGGGCAACTTGCGGGGCCACGTATGTTGGAACATATGGTTGATACGGTCTTGTATTTTGAGGGAGAACGT
CAAAATACATTCCGAATTTTACGCGCGGTCAAAAACCGTTTTGGTTCAACAAATGAAATTGGGATTTTCGAGATGCAGGG
CAATGGTTTAGTGGAAGTGACCAACCCGAGTGAAGTTTTTCTCGAAGAACGTTTGGAGGGCTCTACGGGCTCTGCTATCG
TCTGTGCGTTAGAAGGTACGCGTCCGATATTGGTTGAGATTCAAGCTTTAACAACGCCAACCATGTTTGGAAATGCCAAA
CGTACAACCTCTGGTTTGGACTTTAACCGTGTGAGTTTAATCATGGCAGTACTCGAAAAGCGTGCCGGTTTTCTTTTGCA
ACAACAAGATGCCTACTTAAAATCCGCAGGTGGCGTCAAGTTGGATGAACCAGCCATTGACTTAGCAGTCGCTGTAGCTA
TTGCTTCTAGCTACAAGGAAGAGCCGACAGATGCACGCGAATGCTTTATTGGCGAAATTGGCTTGACGGGTGAAATTCGT
CGTGTTACGCGGATGGAGCAACGTCTCAATGAAGCAAGCAAACTAGGTTTTCAAAAAGTTTACGCGCCTAAGAATAGCTT
GGCAGGCGTAGACATTCCAGAAAATTTGGAAGTGGTCGGTGTGACGACTTTATCAGAATGTTTGAAAAAAGTATTTGGCT
AA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (77-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (359-425)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	80.353	100	0.804
radA	Streptococcus pneumoniae D39	80.353	100	0.804
radA	Streptococcus pneumoniae R6	80.353	100	0.804
radA	Streptococcus pneumoniae TIGR4	80.353	100	0.804
radA	Streptococcus mitis NCTC 12261	80.353	100	0.804
radA	Streptococcus mitis SK321	80.353	100	0.804
radA	Bacillus subtilis subsp. subtilis str. 168	61.438	100	0.623