Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V7A39_RS02370 Genome accession   NZ_CP146749
Coordinates   485125..486930 (+) Length   601 a.a.
NCBI ID   WP_341785069.1    Uniprot ID   -
Organism   Lactococcus petauri strain L3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 480125..491930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7A39_RS02350 (V7A39_02350) - 480274..481098 (-) 825 WP_019292049.1 Cof-type HAD-IIB family hydrolase -
  V7A39_RS02355 (V7A39_02355) - 481463..482884 (+) 1422 WP_019292048.1 NCS2 family permease -
  V7A39_RS02360 (V7A39_02360) - 482961..484061 (+) 1101 WP_341785068.1 YdcF family protein -
  V7A39_RS02365 (V7A39_02365) coiA 484137..485141 (+) 1005 WP_198493935.1 competence protein CoiA Machinery gene
  V7A39_RS02370 (V7A39_02370) pepF 485125..486930 (+) 1806 WP_341785069.1 oligoendopeptidase F Regulator
  V7A39_RS02375 (V7A39_02375) - 486930..487613 (+) 684 WP_019292044.1 O-methyltransferase -
  V7A39_RS02380 (V7A39_02380) - 487711..488619 (+) 909 WP_019292043.1 peptidyl-prolyl cis-trans isomerase -
  V7A39_RS02385 (V7A39_02385) alaS 488869..491487 (+) 2619 WP_198493936.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69735.25 Da        Isoelectric Point: 4.7851

>NTDB_id=944100 V7A39_RS02370 WP_341785069.1 485125..486930(+) (pepF) [Lactococcus petauri strain L3]
MAKKRDEIAENLTWDLSTVFENDAAWELELKRVSERLGTVKHYEGHLLDSAQSLLEITEIELEISRAVEKVYVYASMKHD
QDTQVSRYQEYEAKATNLYAKLGETFAFYEPEFLALTPERYASFRREEPKLEQYSHMFDRLFAKKEHILSPKEEKLLASA
SEIFGAAAETFEIFDNADIELPMIKDEKGQEVQLTHGNYISLMESKERQVRKAAYQALYSNYEQYQHTYAKTLQTNVKVH
NFKAKMRGYHSARQAALSSNFIPEEVYDKLLESVNKYLHLLHRYIKLREQILGLENDLKMYDVYTPLSDLDYKFNYSEAV
EKAEEVLQIFGPEYANHVKKAFEERWIDVAENSGKRSGAYSGGCYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSTFTRE
NQPYVYGDYPIFLAEIASTTNENILTESLLAESTDEKVRFAILYHWLDGFRGTVFRQSQFAEFEHEIHKADQEGKVLTSE
FMNQLYAGLNEKYYGLAAQENPEIQYEWARIPHFYYNFYVFQYATGFAAATYLAEAIVNGGPDAREKYLSYLKAGSSDYP
LAVIAQAGVDMEETTYLESAFAVFEKRLIELEKLVEKGAHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=944100 V7A39_RS02370 WP_341785069.1 485125..486930(+) (pepF) [Lactococcus petauri strain L3]
ATGGCAAAAAAACGTGATGAAATAGCTGAAAACTTAACTTGGGATTTGTCAACTGTGTTTGAAAACGATGCCGCCTGGGA
ACTAGAACTTAAAAGAGTTTCGGAAAGATTAGGGACGGTAAAGCACTACGAAGGACATCTTCTAGATAGCGCTCAAAGCT
TATTAGAAATCACGGAAATTGAGCTGGAAATCTCGCGTGCTGTGGAGAAGGTTTATGTCTATGCCTCAATGAAACATGAC
CAAGATACGCAAGTGAGTCGTTACCAAGAATACGAAGCCAAAGCCACAAATTTATATGCCAAGCTTGGAGAAACCTTTGC
TTTTTACGAGCCGGAATTCTTAGCTTTAACGCCAGAACGTTATGCAAGCTTTAGAAGAGAAGAACCCAAACTGGAGCAAT
ATTCTCATATGTTTGACCGCCTTTTTGCTAAAAAGGAGCATATCTTAAGTCCAAAAGAGGAAAAACTCTTAGCCAGTGCT
AGTGAGATTTTTGGTGCAGCCGCCGAAACTTTCGAAATTTTTGACAATGCTGATATTGAGCTTCCGATGATTAAAGATGA
AAAAGGGCAGGAAGTACAGCTGACACACGGTAATTATATCTCGCTCATGGAAAGTAAGGAACGTCAGGTGCGAAAGGCAG
CTTATCAAGCCCTTTATAGCAACTATGAACAGTATCAGCACACTTATGCTAAAACGCTACAAACAAATGTAAAAGTCCAT
AATTTTAAGGCGAAGATGCGTGGCTACCATTCAGCCCGTCAAGCAGCTTTATCAAGTAATTTTATTCCGGAAGAAGTTTA
CGATAAGCTTTTGGAGTCGGTTAATAAATATTTGCATCTTTTACATCGTTATATTAAATTGCGTGAGCAAATTTTAGGGT
TAGAGAACGATTTAAAGATGTATGATGTCTATACACCCTTATCGGACTTGGATTATAAGTTTAACTACTCCGAGGCAGTG
GAGAAAGCGGAAGAAGTTCTTCAAATTTTTGGACCTGAATATGCGAACCATGTTAAAAAAGCCTTTGAAGAGCGGTGGAT
TGATGTAGCTGAAAATAGCGGTAAACGTTCGGGTGCTTATTCAGGGGGATGCTATGATACAAATGCTTTTATGCTGTTAA
ACTGGCAAGAAACTTTGGATGATTTGTTCACCTTAGTACATGAAATGGGCCACAGTATGCATTCCACATTTACACGAGAA
AATCAACCTTATGTTTATGGGGACTATCCAATCTTTCTTGCAGAAATTGCTTCAACAACCAATGAGAATATCTTGACTGA
AAGTTTACTTGCGGAGTCGACAGATGAAAAAGTGCGATTTGCTATTTTATACCACTGGCTTGATGGTTTCCGTGGCACTG
TTTTCCGTCAAAGCCAATTTGCTGAATTTGAACATGAGATTCATAAAGCTGATCAAGAAGGAAAAGTTCTGACTAGCGAA
TTCATGAACCAGCTTTATGCGGGGCTGAATGAAAAATACTACGGTTTAGCTGCTCAGGAAAATCCTGAAATTCAATATGA
GTGGGCTCGCATTCCGCACTTCTATTATAATTTTTATGTCTTCCAATACGCAACAGGCTTTGCCGCAGCAACTTATCTTG
CTGAGGCTATCGTTAATGGTGGCCCAGATGCGCGTGAAAAATACCTCTCTTATCTCAAAGCAGGATCAAGTGATTATCCA
CTGGCTGTGATTGCTCAAGCAGGTGTGGATATGGAAGAAACAACATATTTAGAATCAGCATTTGCTGTTTTTGAAAAACG
TTTAATTGAGCTAGAAAAATTAGTCGAAAAAGGAGCCCATTTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-180)

Peptidase family M3 (Peptidase_M3)

(202-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

64.393

100

0.644