Detailed information NTG0944092

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V7A39_RS01810
• Genome accession: NZ_CP146749
• Coordinates: 359150..361600 (+)
• Length: 816 a.a.
• NCBI ID: WP_341785108.1
• Uniprot ID: -
• Organism: Lactococcus petauri strain L3
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 354150..366600

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V7A39_RS01785 (V7A39_01785)	-	355071..355583 (+)	513	WP_003134000.1	adenine phosphoribosyltransferase	-
V7A39_RS01790 (V7A39_01790)	rpoE	355709..356269 (+)	561	WP_003134001.1	DNA-directed RNA polymerase subunit delta	-
V7A39_RS01795 (V7A39_01795)	mltG	356375..358090 (+)	1716	WP_019335936.1	endolytic transglycosylase MltG	-
V7A39_RS01800 (V7A39_01800)	greA	358115..358588 (+)	474	WP_040086640.1	transcription elongation factor GreA	-
V7A39_RS01805 (V7A39_01805)	-	358708..359160 (+)	453	WP_019292666.1	CtsR family transcriptional regulator	-
V7A39_RS01810 (V7A39_01810)	clpC	359150..361600 (+)	2451	WP_341785108.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
V7A39_RS01815 (V7A39_01815)	hpf	361723..362280 (+)	558	WP_003134010.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
V7A39_RS01820 (V7A39_01820)	pflB	362528..364861 (+)	2334	WP_019292664.1	formate C-acetyltransferase	-
V7A39_RS01825 (V7A39_01825)	coaE	365099..365704 (+)	606	WP_019292663.1	dephospho-CoA kinase	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 91175.43 Da
• Isoelectric Point: 5.8188

>NTDB_id=944092 V7A39_RS01810 WP_341785108.1 359150..361600(+) (clpC) [Lactococcus petauri strain L3]
MKFNEKDFTPQVVKVLEKSVDYAHKFNYAWVESSHLLAALAEVPASLAFTLLNSEKIDLEEMLIDIEDFSSQVKTKKSEI
KLSPRVETIIEQARALAQNNDKNRIGTEHLLYMLLANEASFAGQLLREQDINIVNLRKKLEQKAYLRVPERRKAVTPASK
RNLSGKVSETTTTPTLDTVSTDLTKAAREGKLDPMIGREREVERLIHILSRRTKNNPVLVGEPGVGKSAIIEGFATRVAA
GNVPVGLRGSRIMALNMAMVVAGTKFRGEFEDRLTAIVDEVTHDKDVIVFIDELHTIIGAGGGMDSVNDASNILKPALAR
GEFQLIGATTYQEYQKYIEKDEALERRFARVNVEEPSEEETVAILQGLKEKFEAYHIVKFEEGALERAVSLSNRYMPSRR
LPDKAIDLLDEAAAKVKITSKTNYTKLDELKAELKAEELRLQKAVVALDIVEAQGIEKDIEKLTHKIDNFTVSENDNPLV
EESDVYAVVSNLTGIPLQQMTKTESERLINLEKELHKRVVGQEEAISAVSRAIRRARSGIADTRRPLGSFMFLGPTGVGK
TELAKALAESVFGSEENMIRVDMSEFMEKFSTSRLIGAPPGYVGYDEGGQLTEQVRNKPYSVILLDEVEKAHPDIFNIML
QILDDGFVTDTKGRKVDFRNTIIIMTSNLGATAIRDDKTVGFGAKSISTDYPAMKARIMEELKKQYRPEFLNRIDETIVF
HSLTEKEIEQVVEIMSKSLVSRLKDQNIKVKFTPAALKVIADKGFDPEYGARPLRKALQREVEDTLSEQLLAGEIHPGDT
ISIGSSNKKIRISVID

Nucleotide

• Length: 2451 bp

>NTDB_id=944092 V7A39_RS01810 WP_341785108.1 359150..361600(+) (clpC) [Lactococcus petauri strain L3]
ATGAAATTTAATGAAAAGGACTTTACACCACAAGTCGTAAAAGTGCTTGAGAAGTCTGTCGACTATGCGCACAAGTTTAA
CTACGCGTGGGTTGAAAGCTCGCACCTATTGGCTGCCTTGGCTGAGGTCCCGGCTTCATTGGCATTTACGCTACTTAATT
CAGAAAAGATTGATTTGGAAGAAATGTTAATCGACATCGAAGATTTTTCAAGTCAAGTGAAGACAAAAAAATCAGAAATA
AAGCTTAGTCCAAGAGTCGAAACGATTATTGAGCAAGCACGAGCACTAGCTCAAAATAATGATAAAAACCGCATCGGAAC
CGAGCATCTCTTATATATGCTGTTGGCAAATGAAGCCAGCTTTGCAGGACAACTTTTACGTGAGCAAGACATCAATATCG
TTAACCTCCGCAAAAAGCTAGAGCAAAAAGCATATCTACGTGTACCAGAGCGCCGTAAAGCGGTGACACCAGCTTCGAAA
AGAAACCTGTCGGGGAAAGTGTCCGAAACAACGACGACACCTACTTTAGACACGGTATCAACAGATTTGACAAAAGCAGC
CCGTGAAGGCAAGCTTGATCCCATGATTGGAAGAGAGCGTGAAGTTGAACGTCTTATCCACATTTTGAGCCGGCGAACAA
AAAATAATCCCGTTCTTGTTGGTGAGCCAGGTGTTGGTAAGTCAGCGATTATTGAAGGCTTTGCGACACGTGTGGCTGCA
GGAAATGTTCCTGTAGGTTTACGTGGTAGCCGCATTATGGCTTTAAATATGGCGATGGTCGTAGCGGGGACAAAATTCCG
TGGTGAATTTGAAGATCGTTTAACGGCTATTGTTGATGAAGTGACACACGATAAAGATGTTATCGTCTTTATCGATGAAC
TGCATACAATCATTGGGGCTGGTGGCGGCATGGACTCGGTCAACGATGCCTCAAACATTTTAAAACCAGCATTAGCACGG
GGCGAGTTCCAACTCATCGGTGCTACCACTTATCAAGAATATCAAAAATATATTGAAAAAGATGAAGCCCTAGAACGCCG
TTTTGCCCGTGTCAATGTCGAAGAACCCTCAGAAGAGGAAACGGTTGCGATTTTACAAGGTTTGAAAGAAAAATTTGAGG
CTTACCATATAGTCAAATTTGAAGAAGGGGCTTTGGAGCGTGCTGTCAGCTTGAGTAATCGCTATATGCCTAGTCGTCGT
CTCCCAGACAAAGCTATTGATCTTCTTGATGAAGCAGCAGCCAAAGTTAAAATCACGAGTAAAACAAATTATACCAAGTT
AGACGAGTTAAAAGCAGAATTAAAAGCGGAAGAACTGAGATTACAAAAAGCAGTTGTTGCTCTTGATATTGTTGAAGCGC
AAGGGATTGAAAAAGATATTGAAAAATTAACGCACAAGATTGATAATTTTACAGTATCTGAAAATGATAATCCTTTGGTG
GAGGAAAGCGATGTTTATGCTGTCGTTTCTAACCTTACAGGAATCCCACTCCAACAGATGACGAAGACAGAAAGTGAACG
TCTGATTAACTTAGAAAAAGAGTTACATAAACGTGTGGTTGGACAGGAAGAAGCGATTTCTGCTGTTTCTCGTGCCATTA
GACGTGCACGTTCAGGGATTGCCGATACGAGACGTCCTTTGGGCTCATTTATGTTCCTTGGTCCGACAGGAGTTGGGAAG
ACAGAGCTTGCTAAGGCTTTAGCGGAAAGTGTTTTTGGCAGTGAAGAAAATATGATTCGTGTAGACATGAGTGAATTTAT
GGAAAAATTCTCGACATCGCGTCTTATCGGAGCACCTCCTGGATATGTAGGTTACGATGAAGGTGGGCAATTGACAGAGC
AAGTCCGTAATAAGCCTTATTCTGTTATTCTCCTTGATGAAGTCGAAAAGGCCCACCCTGATATTTTCAATATCATGTTA
CAAATTTTGGATGATGGTTTCGTTACAGATACCAAAGGACGTAAAGTTGATTTCAGAAATACGATCATCATTATGACATC
TAACTTGGGTGCAACGGCTATTCGTGATGATAAAACGGTTGGTTTTGGGGCTAAATCAATTTCAACGGATTATCCAGCTA
TGAAAGCAAGAATCATGGAAGAGCTGAAGAAACAGTACCGTCCAGAATTTCTCAATCGTATCGATGAAACTATCGTTTTC
CATTCACTGACAGAAAAAGAGATTGAACAAGTCGTGGAAATCATGAGTAAATCTCTTGTATCGCGTTTGAAAGATCAAAA
TATCAAAGTAAAATTTACACCTGCTGCTTTGAAAGTTATTGCTGATAAAGGATTTGATCCTGAATACGGTGCCCGCCCAT
TGCGTAAAGCTCTGCAACGTGAGGTTGAAGACACGCTCAGTGAACAATTGCTTGCCGGCGAAATTCATCCAGGGGATACG
ATTTCGATTGGTTCTTCTAATAAAAAGATTAGAATAAGTGTTATTGATTGA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (357-445)

• AAA domain (Cdc48 subfamily) (AAA_2) (545-716)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (723-803)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (22-69)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (93-142)

• ATPase family associated with various cellular activities (AAA) (AAA) (218-349)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	70.798	99.877	0.707
clpC	Streptococcus thermophilus LMG 18311	49.758	100	0.505
clpC	Streptococcus thermophilus LMD-9	49.758	100	0.505
clpC	Streptococcus pneumoniae TIGR4	49.153	100	0.498
clpC	Streptococcus pneumoniae Rx1	49.031	100	0.496
clpC	Streptococcus pneumoniae D39	49.031	100	0.496
clpC	Streptococcus mutans UA159	47.368	100	0.485
clpC	Bacillus subtilis subsp. subtilis str. 168	48.564	98.162	0.477
clpE	Streptococcus mutans UA159	46.719	78.431	0.366