Detailed information NTG0944083

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: V7A39_RS00925
• Genome accession: NZ_CP146749
• Coordinates: 172556..173917 (+)
• Length: 453 a.a.
• NCBI ID: WP_341785106.1
• Uniprot ID: -
• Organism: Lactococcus petauri strain L3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 167556..178917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V7A39_RS00880 (V7A39_00880)	-	168013..168735 (-)	723	WP_003133770.1	metal ABC transporter ATP-binding protein	-
V7A39_RS00885 (V7A39_00885)	-	168757..169200 (-)	444	WP_003133771.1	zinc-dependent MarR family transcriptional regulator	-
V7A39_RS00890 (V7A39_00890)	infA	169405..169623 (+)	219	WP_003133772.1	translation initiation factor IF-1	-
V7A39_RS00895 (V7A39_00895)	rpmJ	169677..169793 (+)	117	WP_014024193.1	50S ribosomal protein L36	-
V7A39_RS00900 (V7A39_00900)	rpsM	169811..170176 (+)	366	WP_003133773.1	30S ribosomal protein S13	-
V7A39_RS00905 (V7A39_00905)	rpsK	170194..170577 (+)	384	WP_003133774.1	30S ribosomal protein S11	-
V7A39_RS00910 (V7A39_00910)	-	170629..171567 (+)	939	WP_003133775.1	DNA-directed RNA polymerase subunit alpha	-
V7A39_RS00915 (V7A39_00915)	rplQ	171583..171963 (+)	381	WP_003133776.1	50S ribosomal protein L17	-
V7A39_RS00925 (V7A39_00925)	radA	172556..173917 (+)	1362	WP_341785106.1	DNA repair protein RadA	Machinery gene
V7A39_RS00930 (V7A39_00930)	-	174051..175127 (+)	1077	WP_003133779.1	PIN/TRAM domain-containing protein	-
V7A39_RS00935 (V7A39_00935)	-	175150..175779 (+)	630	WP_003133780.1	pyridoxamine 5'-phosphate oxidase family protein	-
V7A39_RS00940 (V7A39_00940)	ald	175967..177088 (+)	1122	WP_003133782.1	alanine dehydrogenase	-
V7A39_RS00945 (V7A39_00945)	-	177122..177616 (-)	495	WP_003133783.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 49796.98 Da
• Isoelectric Point: 4.9326

>NTDB_id=944083 V7A39_RS00925 WP_341785106.1 172556..173917(+) (radA) [Lactococcus petauri strain L3]
MAKKKSTFLCQECGYKSVKKLGRCPNCGAWGSFVEEVEVQEVKNQRVSLTGEHSKPMKLDQVELFDTPRVETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESARQIKLRAERLGDIDTDFYLYAETNMQSIRNEVE
RLQPDFLIVDSIQTIMTPEIQSTQGSVSQVREVTGELMQLAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
QNTFRILRAVKNRFGSTNEIGIFEMQGNGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRAGFLLQQQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEEPTDARECFIGEIGLTGEIR
RVTRMEQRLNEASKLGFQKVYAPKNSLAGVDIPENLEVVGVTTLSECLKKVFG

Nucleotide

• Length: 1362 bp

>NTDB_id=944083 V7A39_RS00925 WP_341785106.1 172556..173917(+) (radA) [Lactococcus petauri strain L3]
ATAGCTAAAAAAAAATCAACATTTCTTTGCCAGGAATGTGGCTACAAATCAGTAAAAAAACTCGGACGTTGTCCCAATTG
TGGTGCTTGGGGTTCCTTTGTTGAAGAAGTAGAAGTCCAAGAGGTAAAAAATCAGAGGGTGAGTCTGACAGGCGAGCACT
CTAAACCCATGAAGTTAGATCAGGTTGAACTTTTCGATACACCGCGTGTGGAAACTGATCTGGATGAGTTTAACCGCGTC
CTTGGAGGCGGTGTCGTTCCAGGAAGTCTAGTCCTTATTGGGGGGGATCCAGGGATTGGTAAATCTACTCTACTGCTTCA
AGTATCTACGCAACTTGCTTCAAGAGGGCGTGTACTTTATGTCAGTGGGGAGGAGTCGGCTCGACAAATTAAGCTGCGTG
CCGAGCGTTTGGGCGACATCGATACAGATTTTTACCTTTACGCCGAAACCAATATGCAAAGCATCCGAAATGAAGTTGAA
CGTCTACAGCCAGACTTTCTTATTGTAGATTCGATTCAAACTATCATGACGCCTGAAATCCAGAGTACTCAGGGTTCGGT
TAGTCAGGTGCGCGAGGTGACAGGAGAATTAATGCAGTTGGCCAAAACCAACGATATTGCGACCTTTATTGTCGGACATG
TCACTAAGGAAGGGCAACTTGCGGGGCCACGTATGTTGGAACATATGGTTGATACGGTCTTGTATTTTGAGGGAGAACGT
CAAAATACATTCCGAATTTTACGCGCGGTCAAAAACCGTTTTGGTTCAACAAATGAAATTGGGATTTTCGAGATGCAGGG
CAATGGTTTAGTGGAAGTGACCAACCCGAGTGAAGTTTTTCTTGAGGAGCGTTTGGAAGGCTCTACGGGCTCTGCTATCG
TCTGTGCGTTAGAAGGTACGCGTCCGATATTGGTTGAGATTCAAGCTTTAACAACGCCAACCATGTTTGGAAATGCCAAA
CGTACAACCTCTGGTTTGGACTTTAACCGTGTGAGTTTAATCATGGCAGTACTCGAAAAGCGTGCCGGTTTTCTTTTGCA
ACAACAGGATGCCTACTTAAAATCCGCAGGTGGTGTCAAGTTGGATGAACCAGCCATTGACTTAGCAGTCGCTGTAGCTA
TTGCTTCTAGCTACAAGGAAGAGCCGACAGATGCACGCGAATGCTTTATTGGCGAAATTGGCTTGACGGGTGAAATTCGT
CGTGTTACGCGGATGGAGCAACGTCTCAATGAAGCAAGCAAACTAGGTTTCCAAAAAGTTTACGCGCCTAAGAATAGCTT
GGCAGGCGTAGATATTCCAGAAAATTTGGAAGTGGTCGGTGTGACGACTTTATCAGAATGTTTGAAAAAAGTATTTGGCT
AA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (77-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (359-425)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	80.132	100	0.801
radA	Streptococcus pneumoniae D39	80.132	100	0.801
radA	Streptococcus pneumoniae R6	80.132	100	0.801
radA	Streptococcus pneumoniae TIGR4	80.132	100	0.801
radA	Streptococcus mitis NCTC 12261	80.132	100	0.801
radA	Streptococcus mitis SK321	80.132	100	0.801
radA	Bacillus subtilis subsp. subtilis str. 168	61.438	100	0.623