NTDB

Overview

Name	comYH	Type	Machinery gene
Locus tag	V7A41_RS08555	Genome accession	NZ_CP146746
Coordinates	1716237..1717172 (-)	Length	311 a.a.
NCBI ID	WP_019292241.1	Uniprot ID	A0AAJ2IZ38
Organism	Lactococcus petauri strain L4
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1711237..1722172

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V7A41_RS08530 (V7A41_08530)	-	1711283..1712143 (-)	861	WP_019292237.1	S1 RNA-binding domain-containing protein	-
V7A41_RS08535 (V7A41_08535)	frr	1712254..1712811 (-)	558	WP_017368646.1	ribosome recycling factor	-
V7A41_RS08540 (V7A41_08540)	pyrH	1712840..1713556 (-)	717	WP_019292238.1	UMP kinase	-
V7A41_RS08545 (V7A41_08545)	-	1713647..1714840 (-)	1194	WP_019294231.1	acetate kinase	-
V7A41_RS08550 (V7A41_08550)	-	1714959..1716152 (-)	1194	WP_019292240.1	acetate kinase	-
V7A41_RS08555 (V7A41_08555)	comYH	1716237..1717172 (-)	936	WP_019292241.1	class I SAM-dependent methyltransferase	Machinery gene
V7A41_RS08560 (V7A41_08560)	-	1717218..1717448 (-)	231	WP_019292242.1	DUF3165 family protein	-
V7A41_RS08565 (V7A41_08565)	typA	1717527..1719368 (-)	1842	WP_019335381.1	translational GTPase TypA	-
V7A41_RS08570 (V7A41_08570)	-	1719689..1719901 (+)	213	WP_003133311.1	YqgQ family protein	-
V7A41_RS08575 (V7A41_08575)	-	1719894..1720859 (+)	966	WP_019292244.1	ROK family glucokinase	-
V7A41_RS08580 (V7A41_08580)	-	1720879..1721259 (+)	381	WP_019292245.1	rhodanese-like domain-containing protein	-
V7A41_RS08585 (V7A41_08585)	-	1721299..1721745 (-)	447	WP_003133306.1	DNA starvation/stationary phase protection protein	-

Sequence

Protein

Download Length: 311 a.a. Molecular weight: 35095.12 Da Isoelectric Point: 4.6120

                                >NTDB_id=944069 V7A41_RS08555 WP_019292241.1 1716237..1717172(-) (comYH) [Lactococcus petauri strain L4]

MDIEKIEKAFGLVLENIMAIQAELLTDFYDAFVEQNAAYLGALEFASLTKENNDKVRSMNLTKSEWQKLFQFVLLQGSRV

APMQANHNLTPDSIGFIFNFIIEELHKERKIRLLEFGSGTGNLAETLLVHMQKEVDYVGFEVDDLLLDLSASMSEVMGTE

ASFLQIDAVKPQPLEPVDVVMSDLPVGYYPDDETASHFQVHDKSEHTYVHHLMVEQSFKYLKESGFALFLAPDNLLTSAQ

SEFLKAWIKEHAHVAAVITLPSSLFKGAGKSIYLLSKNQTNTPTFVYPLSDLADRSILQEFMSEFVKNVKI

Nucleotide

Download Length: 936 bp

                                >NTDB_id=944069 V7A41_RS08555 WP_019292241.1 1716237..1717172(-) (comYH) [Lactococcus petauri strain L4]

ATGGATATAGAGAAAATCGAAAAAGCCTTTGGATTAGTTCTTGAGAATATTATGGCAATTCAAGCAGAGCTCTTGACTGA

TTTTTATGATGCTTTTGTGGAACAAAATGCAGCTTACTTAGGCGCTTTAGAATTTGCGTCACTGACGAAGGAAAATAATG

ATAAGGTTCGTTCAATGAACCTCACGAAAAGTGAATGGCAAAAGCTGTTTCAGTTTGTTTTGCTTCAGGGGTCACGTGTC

GCACCAATGCAGGCAAATCATAATTTAACTCCGGATTCTATTGGTTTCATCTTTAATTTTATCATTGAGGAGTTACACAA

AGAAAGAAAGATTCGTTTACTAGAATTTGGCTCAGGAACGGGGAATTTGGCGGAAACGCTTTTGGTTCACATGCAAAAAG

AAGTAGACTATGTTGGTTTTGAAGTAGATGACCTCTTGTTGGATTTGTCCGCTTCAATGTCAGAAGTCATGGGAACAGAA

GCAAGTTTTCTCCAAATCGATGCCGTTAAACCACAGCCCTTGGAACCTGTGGATGTTGTGATGAGTGATCTCCCAGTTGG

TTATTATCCAGACGATGAAACAGCCAGCCATTTTCAAGTGCATGACAAATCAGAACATACCTATGTGCACCATTTAATGG

TTGAGCAATCTTTCAAATATCTGAAAGAGAGTGGTTTTGCGCTCTTCTTAGCTCCAGATAATCTTTTGACAAGTGCACAG

TCTGAGTTTTTGAAGGCTTGGATTAAAGAGCATGCGCATGTTGCTGCAGTTATTACATTACCTTCATCACTCTTTAAAGG

TGCAGGGAAATCAATTTATTTATTAAGTAAAAACCAGACAAATACACCGACTTTTGTTTACCCCTTGTCTGATTTAGCAG

ACCGTTCTATTTTGCAAGAATTTATGTCTGAGTTTGTGAAAAATGTTAAGATTTGA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(173-290)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYH	Streptococcus mutans UA140	49.677	99.678	0.495
comYH	Streptococcus mutans UA159	49.355	99.678	0.492

Detailed information NTG0944069