Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   V4331_RS09590 Genome accession   NZ_CP146743
Coordinates   1927700..1928743 (-) Length   347 a.a.
NCBI ID   WP_341784148.1    Uniprot ID   -
Organism   Lactococcus formosensis subsp. formosensis strain L5     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1922700..1933743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4331_RS09575 (V4331_09580) rpsB 1922731..1923504 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  V4331_RS09580 (V4331_09585) - 1923779..1924819 (+) 1041 WP_270265257.1 lactonase family protein -
  V4331_RS09585 (V4331_09590) adhE 1924974..1927667 (+) 2694 WP_341784147.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  V4331_RS09590 (V4331_09595) sepM 1927700..1928743 (-) 1044 WP_341784148.1 SepM family pheromone-processing serine protease Regulator
  V4331_RS09595 (V4331_09600) coaD 1928733..1929230 (-) 498 WP_096368959.1 pantetheine-phosphate adenylyltransferase -
  V4331_RS09600 (V4331_09605) rsmD 1929220..1929759 (-) 540 WP_096368958.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V4331_RS09605 (V4331_09610) - 1929854..1931200 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37762.01 Da        Isoelectric Point: 7.2681

>NTDB_id=944027 V4331_RS09590 WP_341784148.1 1927700..1928743(-) (sepM) [Lactococcus formosensis subsp. formosensis strain L5]
MKNEKIKKHKKLKLFFAVALPLLVIVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEYKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNRQFDLVNQFYMQTAQNTAIYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGRTFKSSTEMIDYVSQQKVGGSVTINYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPEVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNSDMKIVPVKTIQDAIDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=944027 V4331_RS09590 WP_341784148.1 1927700..1928743(-) (sepM) [Lactococcus formosensis subsp. formosensis strain L5]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCGTCGCGCTACCGCTTCTTGTTATAGTGGG
GTTGTTCTTCCCCTTACCTTACTATATCGAGCAACCAGGAGGAACGATTCCAGTTAACCAAATGGTTGATGTCGCAGGGA
AAAAAGATGAGTATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGCGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCTACTGTTGTGAGTAGTGAAGAGATGACAGGTGGGATGACCAACCGGCAATTTGATTTGGTTAA
TCAGTTCTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTGGCAGGGAAGCCTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCGACATTTAAAAATGACTTACAACTTTCGGATACGATAACAGCA
GTTAATGGTCGTACTTTCAAATCTTCAACTGAAATGATTGACTATGTGTCTCAACAAAAAGTTGGGGGTAGCGTTACTAT
CAATTATACACGCGTAGATGGCAGTAATCATGAAGCCACAGGGAAGTATATTAAGCTGAGTAATGGTAAGACGGGGATTG
GTATTGGTTTAGTAGACCACACACAAGTTGTGACAGACCCTGAAGTTAAAATTGATGCCGGAAGTATTGGCGGACCGAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACTATCAATGAGGATGGTAGCATCGGGCAAATAGGTGGCGTCGATAAAAAAGTTGCTACAGCAAGTAATGCGGGTG
CAAAAATTTTCCTTTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAACTACACAGATGCGCTT
GCGGCAGCTAAAAAGTTGAATTCAGATATGAAAATCGTACCTGTAAAGACGATTCAAGATGCAATAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.415

100

0.484