Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | V4331_RS08020 | Genome accession | NZ_CP146743 |
| Coordinates | 1617180..1619426 (-) | Length | 748 a.a. |
| NCBI ID | WP_341784049.1 | Uniprot ID | - |
| Organism | Lactococcus formosensis subsp. formosensis strain L5 | ||
| Function | degradation of ComX (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IScluster/Tn | 1615937..1617078 | 1617180..1619426 | flank | 102 |
Gene organization within MGE regions
Location: 1615937..1619426
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V4331_RS08015 (V4331_08025) | - | 1615937..1617094 (+) | 1158 | Protein_1572 | IS3-like element IS-LL6 family transposase | - |
| V4331_RS08020 (V4331_08030) | clpC | 1617180..1619426 (-) | 2247 | WP_341784049.1 | AAA family ATPase | Regulator |
Sequence
Protein
Download Length: 748 a.a. Molecular weight: 83510.53 Da Isoelectric Point: 4.6983
>NTDB_id=944018 V4331_RS08020 WP_341784049.1 1617180..1619426(-) (clpC) [Lactococcus formosensis subsp. formosensis strain L5]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAEATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGDGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNTQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEYPEYKELLADL
VDDKIVIVNKPEEVKDTADTSDNEVEEK
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAEATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGDGNMDAGN
ILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNTQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEYPEYKELLADL
VDDKIVIVNKPEEVKDTADTSDNEVEEK
Nucleotide
Download Length: 2247 bp
>NTDB_id=944018 V4331_RS08020 WP_341784049.1 1617180..1619426(-) (clpC) [Lactococcus formosensis subsp. formosensis strain L5]
ATGCTCTGCCAAAATTGTAAAATAAATGAAGCGACAATTCACCTTTATACGAATGTGAATGGACAACGTAAGCAAGTGGA
TTTATGCCAAAATTGCTATCAAATTATGAAATCAGGAGGTCAAGAAAGCTTGTTTGCTGAGGCGACAAATATTTCTAATA
ATGATGACCCATTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGACGGACAATGACACCTCCA
ACACAAGCTGGAGGTCGAGGTCCAGGAGGACCACAAAATCCTCGTGGAGGTCAAGCACCTAAAGGACTTCTCGAAGAGTT
CGGAGTCAATATCACAGATGCCGCACGCCGTGGAGAAATTGATCCTGTTATTGGGCGAGATTCTGAAATTACACGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCAGGTGTTGGTAAAACAGCAGTTGTTGAA
GGGTTAGCCCAAAAAATCGTTGATGGTGATGTACCACAAAAATTGCAAAATAAAGAAGTTATACGTCTTGATGTTGTTAG
CCTCGTCCAAGGTACTGGTGTACGTGGGCAATTTGAAGAACGTATGCAAAAGCTGATGGAAGAGATTCGTAAACGCGATG
ATGTTATCCTCTTCATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCAGCAGGTGATGGCAATATGGATGCAGGAAAT
ATTCTAAAACCAGCTTTGGCGCGTGGTGAACTACAACTTGTTGGGGCAACAACACTCAATGAATATAGAATTATCGAAAA
AGACGCGGCACTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCCTCTGTAGATGAGACCATTACGATTTTACGTG
GGATTCAAAAACGCTATGAAGACTATCATCATGTGAAATATTCAGATGAAGCAATCTTAGCTGCGGCGAATCTCTCGAAC
CGTTATATACAGGACCGTTTCCTTCCCGATAAAGCAATTGACTTACTGGATGAAGCGGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGATATCAAGAAACGTATTGAGCAAGCAGAAGTACAAAAAAATGAAGCAATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGGGAGCTTCAAAGTCATGAGATTTCAGATACAGAT
ATGCCAAATATCACAGAAAAAGATATAGAAGCAATCGTTGAAGAAAAAACACATATTCCTGTGGGTGATTTGAAAGAAAA
AGAGCAAACACAGCTGATCAATTTGGCTGAGGACTTGAAAGAACATGTTATTGGACAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCACGTGTCGGACTTGGAAAACCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGTAAGACTGAACTCGCTAAACAATTAGCTTATGAGCTCTTTGGCTCAAGAGATAGTATGATCCGCTTTGATAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCGCCTCCAGGATATGTAGGGTACGAGGAAGCAGGTC
AGCTGACAGAACGTGTCCGCCGTAACCCGTACAGCTTAATTTTATTGGATGAGATTGAGAAAGCACACCCTGATGTAATG
CATATGTTCTTGCAGATTCTTGATGACGGGCGTTTGACAGATGCACAAGGGCGCACAGTTTCCTTCAAAGATGCAATCAT
CATTATGACCTCAAATGCGGGGACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGTCGTACGAATT
CAGTGCTTGGGGAACTCGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTCAATACTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGACCTGGGTTATGATCCGAAAATGGGAGCACGCCCATTGCGTCGTA
CCATCCAAGATAATATCGAGGACGCTATTGCAGATTTTTACATTGAGTATCCTGAGTATAAAGAGTTACTTGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAGGACACAGCGGATACATCTGATAATGAAGTTGAAGA
GAAATAA
ATGCTCTGCCAAAATTGTAAAATAAATGAAGCGACAATTCACCTTTATACGAATGTGAATGGACAACGTAAGCAAGTGGA
TTTATGCCAAAATTGCTATCAAATTATGAAATCAGGAGGTCAAGAAAGCTTGTTTGCTGAGGCGACAAATATTTCTAATA
ATGATGACCCATTTAATCCATTTCCAGATATTTTCCAAGCCTTACATGGTAATGATCAAGGACGGACAATGACACCTCCA
ACACAAGCTGGAGGTCGAGGTCCAGGAGGACCACAAAATCCTCGTGGAGGTCAAGCACCTAAAGGACTTCTCGAAGAGTT
CGGAGTCAATATCACAGATGCCGCACGCCGTGGAGAAATTGATCCTGTTATTGGGCGAGATTCTGAAATTACACGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCAGGTGTTGGTAAAACAGCAGTTGTTGAA
GGGTTAGCCCAAAAAATCGTTGATGGTGATGTACCACAAAAATTGCAAAATAAAGAAGTTATACGTCTTGATGTTGTTAG
CCTCGTCCAAGGTACTGGTGTACGTGGGCAATTTGAAGAACGTATGCAAAAGCTGATGGAAGAGATTCGTAAACGCGATG
ATGTTATCCTCTTCATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCAGCAGGTGATGGCAATATGGATGCAGGAAAT
ATTCTAAAACCAGCTTTGGCGCGTGGTGAACTACAACTTGTTGGGGCAACAACACTCAATGAATATAGAATTATCGAAAA
AGACGCGGCACTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCCTCTGTAGATGAGACCATTACGATTTTACGTG
GGATTCAAAAACGCTATGAAGACTATCATCATGTGAAATATTCAGATGAAGCAATCTTAGCTGCGGCGAATCTCTCGAAC
CGTTATATACAGGACCGTTTCCTTCCCGATAAAGCAATTGACTTACTGGATGAAGCGGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGATATCAAGAAACGTATTGAGCAAGCAGAAGTACAAAAAAATGAAGCAATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGGGAGCTTCAAAGTCATGAGATTTCAGATACAGAT
ATGCCAAATATCACAGAAAAAGATATAGAAGCAATCGTTGAAGAAAAAACACATATTCCTGTGGGTGATTTGAAAGAAAA
AGAGCAAACACAGCTGATCAATTTGGCTGAGGACTTGAAAGAACATGTTATTGGACAAGATGAAGCGATTGATAAAATTT
CTAAAGCTGTGCGTCGTTCACGTGTCGGACTTGGAAAACCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGTAAGACTGAACTCGCTAAACAATTAGCTTATGAGCTCTTTGGCTCAAGAGATAGTATGATCCGCTTTGATAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGTGCGCCTCCAGGATATGTAGGGTACGAGGAAGCAGGTC
AGCTGACAGAACGTGTCCGCCGTAACCCGTACAGCTTAATTTTATTGGATGAGATTGAGAAAGCACACCCTGATGTAATG
CATATGTTCTTGCAGATTCTTGATGACGGGCGTTTGACAGATGCACAAGGGCGCACAGTTTCCTTCAAAGATGCAATCAT
CATTATGACCTCAAATGCGGGGACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGTCGTACGAATT
CAGTGCTTGGGGAACTCGGTAATTTCTTCAGTCCAGAATTCATGAACCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTCAATACTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGACCTGGGTTATGATCCGAAAATGGGAGCACGCCCATTGCGTCGTA
CCATCCAAGATAATATCGAGGACGCTATTGCAGATTTTTACATTGAGTATCCTGAGTATAAAGAGTTACTTGCAGACTTG
GTTGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAAAGGACACAGCGGATACATCTGATAATGAAGTTGAAGA
GAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Lactococcus lactis subsp. cremoris KW2 |
86.533 |
100 |
0.868 |
| clpE | Streptococcus mutans UA159 |
77.411 |
100 |
0.783 |
| clpE | Streptococcus pneumoniae TIGR4 |
77.565 |
97.727 |
0.758 |
| clpE | Streptococcus pneumoniae Rx1 |
77.565 |
97.727 |
0.758 |
| clpE | Streptococcus pneumoniae D39 |
77.565 |
97.727 |
0.758 |
| clpE | Streptococcus pneumoniae R6 |
77.565 |
97.727 |
0.758 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
52.97 |
83.289 |
0.441 |
| clpC | Streptococcus pneumoniae D39 |
46.19 |
85.963 |
0.397 |
| clpC | Streptococcus pneumoniae Rx1 |
46.19 |
85.963 |
0.397 |
| clpC | Streptococcus pneumoniae TIGR4 |
46.034 |
85.963 |
0.396 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.961 |
81.952 |
0.393 |
| clpC | Streptococcus mutans UA159 |
46.602 |
82.62 |
0.385 |
| clpC | Streptococcus thermophilus LMD-9 |
46.006 |
83.69 |
0.385 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.645 |
82.888 |
0.378 |