Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   V4331_RS01970 Genome accession   NZ_CP146743
Coordinates   387886..390336 (+) Length   816 a.a.
NCBI ID   WP_341784278.1    Uniprot ID   -
Organism   Lactococcus formosensis subsp. formosensis strain L5     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 382886..395336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4331_RS01945 (V4331_01950) mltG 383007..384719 (+) 1713 WP_341784275.1 endolytic transglycosylase MltG -
  V4331_RS01950 (V4331_01955) greA 384745..385218 (+) 474 WP_017369377.1 transcription elongation factor GreA -
  V4331_RS01955 (V4331_01960) - 385358..385582 (+) 225 WP_341784276.1 adenine methyltransferase -
  V4331_RS01960 (V4331_01965) - 385669..387321 (+) 1653 WP_341784277.1 hypothetical protein -
  V4331_RS01965 (V4331_01970) - 387444..387896 (+) 453 WP_096368658.1 CtsR family transcriptional regulator -
  V4331_RS01970 (V4331_01975) clpC 387886..390336 (+) 2451 WP_341784278.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  V4331_RS01975 (V4331_01980) hpf 390459..391016 (+) 558 WP_003134010.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  V4331_RS01980 (V4331_01985) pflB 391264..393597 (+) 2334 WP_341784279.1 formate C-acetyltransferase -
  V4331_RS01985 (V4331_01990) coaE 394058..394663 (+) 606 WP_096368656.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 816 a.a.        Molecular weight: 91122.33 Da        Isoelectric Point: 6.0545

>NTDB_id=944004 V4331_RS01970 WP_341784278.1 387886..390336(+) (clpC) [Lactococcus formosensis subsp. formosensis strain L5]
MKFNEKDYTPQVIRVLEKSVDYAHKFNYAWVESSHLLAALAEVPASLAFTLLNSEKIDLEEMLIDIEDFSSQVKTKKSEI
KLSPRVEAIIEQARALAQNNDKNRIGTEHLLYMLLANDAGFAGQLLREQNINIVNLRKKLEQKAYLRVPERRKAVTPASK
RNLSGKVSETTTTPTLDTVSTDLTKAAREGKLDPMIGREREVERLIHILSRRTKNNPVLVGEPGVGKSAIIEGFATRVAA
GDVPVGLRGSRIMALNMAMVVAGTKFRGEFEDRLTAIVDEVTHDKDVIVFIDELHTIIGAGGGMDSVNDASNILKPALAR
GEFQLIGATTYQEYQKYIEKDEALERRFARVNVEEPSEDETVAILQGLKEKFEAYHAVKFEEGTLERAVSLSNRYMPSRR
LPDKAIDLLDEAAAKVKITSKTNYTKLDELKSELKAEELRLQKAVVALDIVEAQGIEKDIEKLTHKIDNFTVSENDNPLV
EESDVYAVVSNLTGIPLQQMTKTESERLINLEKELHKRVVGQEEAISAVSRAIRRARSGIADTRRPLGSFMFLGPTGVGK
TELAKALAESVFGSEENMIRVDMSEFMEKFSTSRLIGAPPGYVGYDEGGQLTEQVRNKPYSVILLDEVEKAHPDIFNIML
QILDDGFVTDTKGRKVDFRNTIIIMTSNLGATAIRDDKTVGFGAKSISTDYAAMKARIMEELKKQYRPEFLNRIDETIVF
HSLTEKEIEQVVKIMSKSLVSRLKDQNIKVKFTPAALKVIADKGFDPEYGARPLRKALQREVEDTLSEQLLAGEIHPGDT
ISIGSSNKKIRISVID

Nucleotide


Download         Length: 2451 bp        

>NTDB_id=944004 V4331_RS01970 WP_341784278.1 387886..390336(+) (clpC) [Lactococcus formosensis subsp. formosensis strain L5]
ATGAAATTTAATGAAAAGGACTATACACCACAAGTCATAAGAGTGCTTGAGAAGTCTGTTGACTATGCGCATAAGTTTAA
CTACGCTTGGGTTGAAAGCTCGCACTTATTGGCTGCCTTAGCTGAGGTCCCGGCTTCATTGGCATTTACGCTACTTAATT
CAGAAAAAATTGATTTGGAAGAAATGTTAATCGACATTGAAGATTTTTCAAGTCAAGTGAAGACGAAGAAATCAGAAATA
AAGCTTAGCCCAAGAGTTGAGGCAATTATTGAACAAGCACGTGCATTGGCTCAAAACAACGATAAAAACCGTATCGGGAC
AGAGCATCTCTTGTATATGCTTTTAGCAAATGATGCTGGCTTTGCAGGACAACTTTTACGTGAGCAAAACATCAATATCG
TTAACCTCCGCAAAAAGCTAGAGCAAAAAGCATATCTACGTGTACCAGAACGCCGTAAAGCGGTGACACCAGCTTCGAAA
AGAAACTTGTCAGGGAAAGTTTCCGAAACCACGACAACGCCTACTTTAGACACGGTATCGACAGATTTGACAAAAGCAGC
CCGTGAAGGCAAGCTTGATCCAATGATTGGAAGAGAGCGAGAAGTCGAACGCCTCATCCACATTTTGAGTCGTCGGACAA
AGAATAATCCTGTTCTTGTTGGTGAACCTGGTGTTGGTAAGTCAGCGATTATTGAAGGCTTTGCGACGCGTGTGGCTGCA
GGGGATGTTCCTGTAGGTTTGCGTGGCAGTCGTATCATGGCCTTGAATATGGCGATGGTTGTTGCGGGGACAAAATTCCG
TGGTGAATTTGAAGACCGTTTGACAGCTATCGTTGATGAAGTGACACATGATAAAGATGTGATTGTCTTTATCGATGAAC
TTCATACCATTATCGGTGCTGGTGGAGGCATGGATTCTGTTAATGATGCTTCCAACATCTTAAAACCGGCATTAGCACGT
GGTGAGTTTCAACTTATTGGGGCAACAACTTATCAAGAATATCAAAAATATATTGAAAAAGATGAGGCCCTAGAACGTCG
TTTTGCCCGTGTTAATGTTGAAGAACCATCAGAAGATGAAACAGTTGCAATCTTACAAGGGTTAAAAGAAAAATTTGAAG
CTTACCATGCGGTCAAATTTGAAGAGGGAACTTTGGAACGTGCCGTCAGTCTGAGCAATCGTTATATGCCAAGTCGTCGT
CTGCCAGATAAAGCAATTGATCTCCTTGATGAAGCCGCAGCCAAAGTTAAAATTACGAGTAAAACAAATTACACCAAGCT
TGACGAATTAAAATCAGAGTTAAAAGCAGAAGAGCTGAGATTACAAAAAGCAGTTGTAGCACTTGATATTGTTGAAGCAC
AGGGGATTGAAAAAGATATTGAAAAGTTAACGCATAAAATTGATAACTTTACAGTATCGGAAAATGATAATCCTTTGGTT
GAGGAAAGCGATGTTTATGCTGTCGTTTCCAACCTTACAGGGATTCCTCTCCAACAGATGACGAAAACAGAAAGTGAACG
TCTGATTAATCTAGAAAAAGAGTTACATAAGCGTGTAGTTGGTCAGGAAGAAGCGATATCGGCTGTTTCTCGTGCCATAA
GACGTGCACGTTCAGGTATCGCCGATACGAGACGCCCTTTGGGTTCATTTATGTTCCTTGGTCCGACAGGGGTTGGGAAG
ACAGAGCTTGCTAAGGCTTTAGCGGAAAGTGTTTTTGGCAGTGAAGAAAACATGATTCGCGTAGACATGAGTGAATTTAT
GGAAAAATTCTCGACATCACGCCTGATTGGAGCGCCTCCAGGCTACGTAGGTTATGATGAAGGGGGACAACTAACAGAGC
AAGTCCGTAATAAGCCTTATTCTGTTATCCTTCTTGATGAAGTCGAAAAGGCCCATCCTGATATTTTCAATATCATGTTA
CAAATTCTAGATGATGGTTTCGTTACAGACACGAAGGGTCGTAAAGTTGATTTCAGAAATACGATTATCATTATGACATC
TAACCTTGGTGCAACAGCTATTCGTGATGATAAAACAGTTGGTTTTGGTGCCAAATCAATCTCAACAGACTATGCAGCTA
TGAAAGCGAGAATCATGGAAGAGCTGAAGAAACAGTACCGTCCAGAATTTCTCAATCGTATCGATGAAACTATCGTTTTC
CATTCACTGACAGAAAAAGAGATTGAACAAGTCGTGAAAATTATGAGTAAATCTCTCGTATCACGCTTGAAAGATCAAAA
TATCAAAGTGAAATTTACACCTGCTGCTTTGAAAGTTATTGCTGATAAAGGATTTGATCCTGAATACGGTGCCCGCCCAT
TGCGTAAAGCTCTGCAACGTGAGGTTGAAGACACGCTCAGTGAGCAATTGCTTGCCGGCGAAATTCATCCGGGGGATACG
ATTTCTATTGGTTCTTCTAATAAAAAGATTAGAATAAGTGTTATTGATTGA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(218-349)

AAA lid domain (AAA_lid_9)

(357-445)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(723-803)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(22-69)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(93-142)

AAA domain (Cdc48 subfamily) (AAA_2)

(545-716)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

71.166

99.877

0.711
  clpC Streptococcus thermophilus LMG 18311

49.11

100

0.507
  clpC Streptococcus thermophilus LMD-9

49.11

100

0.507
  clpC Streptococcus pneumoniae TIGR4

49.395

100

0.5
  clpC Streptococcus pneumoniae Rx1

49.274

100

0.499
  clpC Streptococcus pneumoniae D39

49.274

100

0.499
  clpC Streptococcus mutans UA159

47.368

100

0.485
  clpC Bacillus subtilis subsp. subtilis str. 168

48.439

98.162

0.475
  clpE Streptococcus mutans UA159

46.719

78.431

0.366