Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | V7A37_RS00760 | Genome accession | NZ_CP146741 |
| Coordinates | 147612..147878 (+) | Length | 88 a.a. |
| NCBI ID | WP_255566449.1 | Uniprot ID | - |
| Organism | Lactococcus petauri strain L6 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 142612..152878
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V7A37_RS00725 (V7A37_00725) | rpsU | 144211..144387 (+) | 177 | WP_003134539.1 | 30S ribosomal protein S21 | - |
| V7A37_RS00730 (V7A37_00730) | comGA | 144573..145517 (+) | 945 | WP_195916935.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V7A37_RS00735 (V7A37_00735) | comGB | 145456..146475 (+) | 1020 | WP_255566448.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| V7A37_RS00740 (V7A37_00740) | comYC | 146494..146799 (+) | 306 | WP_029343537.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V7A37_RS00745 (V7A37_00745) | comGD | 146774..147190 (+) | 417 | WP_019336004.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| V7A37_RS00750 (V7A37_00750) | - | 147222..147320 (+) | 99 | WP_255566393.1 | hypothetical protein | - |
| V7A37_RS00755 (V7A37_00755) | comGE | 147293..147457 (+) | 165 | WP_019336003.1 | competence system putative prepilin ComGE | - |
| V7A37_RS00760 (V7A37_00760) | comYF | 147612..147878 (+) | 267 | WP_255566449.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| V7A37_RS00765 (V7A37_00765) | - | 148110..148955 (+) | 846 | WP_019336001.1 | metal ABC transporter solute-binding protein, Zn/Mn family | - |
| V7A37_RS00770 (V7A37_00770) | - | 149026..149910 (-) | 885 | WP_019336000.1 | RluA family pseudouridine synthase | - |
| V7A37_RS00775 (V7A37_00775) | - | 149986..152274 (+) | 2289 | WP_019335999.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 10169.57 Da Isoelectric Point: 10.1554
>NTDB_id=943949 V7A37_RS00760 WP_255566449.1 147612..147878(+) (comYF) [Lactococcus petauri strain L6]
MRSELEGASLDKVENNYLYVRKNVNLRFGLSSKGDFRKTNANGRGYQPMIHHVKNVKISQEGEQVKIILSFEKGGDRIFL
YKFSEKES
MRSELEGASLDKVENNYLYVRKNVNLRFGLSSKGDFRKTNANGRGYQPMIHHVKNVKISQEGEQVKIILSFEKGGDRIFL
YKFSEKES
Nucleotide
Download Length: 267 bp
>NTDB_id=943949 V7A37_RS00760 WP_255566449.1 147612..147878(+) (comYF) [Lactococcus petauri strain L6]
CTGAGAAGCGAACTTGAGGGAGCAAGCTTAGATAAGGTGGAAAATAACTATCTTTATGTCCGCAAAAATGTCAATCTAAG
ATTTGGACTTTCCTCCAAAGGAGATTTTCGGAAAACTAATGCTAATGGGCGAGGTTATCAACCCATGATCCATCATGTAA
AAAATGTTAAAATCAGCCAGGAGGGAGAGCAGGTAAAAATTATCTTGTCTTTTGAAAAAGGAGGAGACCGCATATTTCTT
TACAAGTTCTCAGAAAAAGAAAGTTAA
CTGAGAAGCGAACTTGAGGGAGCAAGCTTAGATAAGGTGGAAAATAACTATCTTTATGTCCGCAAAAATGTCAATCTAAG
ATTTGGACTTTCCTCCAAAGGAGATTTTCGGAAAACTAATGCTAATGGGCGAGGTTATCAACCCATGATCCATCATGTAA
AAAATGTTAAAATCAGCCAGGAGGGAGAGCAGGTAAAAATTATCTTGTCTTTTGAAAAAGGAGGAGACCGCATATTTCTT
TACAAGTTCTCAGAAAAAGAAAGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA140 |
51.724 |
98.864 |
0.511 |
| comYF | Streptococcus mutans UA159 |
50.575 |
98.864 |
0.5 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
50.588 |
96.591 |
0.489 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae D39 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae R6 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
35.955 |
100 |
0.364 |