Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   V7A38_RS09405 Genome accession   NZ_CP146739
Coordinates   1846771..1847814 (-) Length   347 a.a.
NCBI ID   WP_341784633.1    Uniprot ID   -
Organism   Lactococcus garvieae strain L7     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1841771..1852814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7A38_RS09390 (V7A38_09390) rpsB 1841805..1842578 (-) 774 WP_014025489.1 30S ribosomal protein S2 -
  V7A38_RS09395 (V7A38_09395) - 1842851..1843891 (+) 1041 WP_014025490.1 lactonase family protein -
  V7A38_RS09400 (V7A38_09400) adhE 1844047..1846740 (+) 2694 WP_014025491.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  V7A38_RS09405 (V7A38_09405) sepM 1846771..1847814 (-) 1044 WP_341784633.1 SepM family pheromone-processing serine protease Regulator
  V7A38_RS09410 (V7A38_09410) coaD 1847804..1848301 (-) 498 WP_014025493.1 pantetheine-phosphate adenylyltransferase -
  V7A38_RS09415 (V7A38_09415) rsmD 1848291..1848830 (-) 540 WP_014025494.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V7A38_RS09420 (V7A38_09420) - 1848925..1850271 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37792.09 Da        Isoelectric Point: 6.9820

>NTDB_id=943941 V7A38_RS09405 WP_341784633.1 1846771..1847814(-) (sepM) [Lactococcus garvieae strain L7]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVQANAASMLYS
KSNSFATILSSEEMTGGMTNQQFDLVNQFYMQTAQNTAVYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTDMIDYVSQQKVGDEVTIKYTRMDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNSGAKIFLCPDETEEQAKSSGTTNNYTAAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=943941 V7A38_RS09405 WP_341784633.1 1846771..1847814(-) (sepM) [Lactococcus garvieae strain L7]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGTTACCGCTTCTTATTGTAGTGGG
TTTGTTCTTCCCCTTACCTTACTATATCGAGCAGCCCGGAGGAACCATTCCAGTTAATCAGATGGTCGATGTTGCGGGAA
AGAAAGATGAACATAAAGGCAATTTTTATTTAACGACTGTTGAAATGGTGCAGGCCAATGCCGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTATTTTGAGTAGTGAAGAGATGACGGGTGGGATGACTAATCAGCAATTTGACTTGGTCAA
CCAGTTCTATATGCAGACCGCGCAAAATACAGCTGTTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGGGTCTACGTTTTGAGTATCACTGAGGATTCGACATTTAAAAATGACTTGCAACTTTCGGATACGATAACGGCA
GTTAATGGCCACACTTTCAAATCTTCAACTGATATGATTGACTATGTGTCTCAACAAAAAGTTGGAGATGAGGTGACCAT
CAAGTACACACGGATGGATGGCAGCAACCATGAAGCCACAGGAAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GTATTGGTTTAGTAGATCATACACAGGTTGTGACAGACCCTAAAGTTAAGATCGATGCCGGAAGTATTGGCGGGCCAAGT
GCTGGGATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAAGATGGCAGCATCGGGCAAATAGGTGGTGTTGATAAAAAAGTTGCTACAGCAAGCAATTCGGGTG
CAAAAATTTTCCTTTGCCCGGATGAAACGGAAGAACAGGCAAAGTCTTCGGGTACAACAAATAACTATACAGCTGCGCTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATCGTACCTGTAAAGACGATCCAAGATGCACTAGACTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(134-194)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.991

100

0.49