Detailed information NTG0943932

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V7A38_RS07930
• Genome accession: NZ_CP146739
• Coordinates: 1559950..1562196 (-)
• Length: 748 a.a.
• NCBI ID: WP_341784603.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain L7
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1554950..1567196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V7A38_RS07900 (V7A38_07900)	uvrB	1555101..1557089 (-)	1989	WP_014025300.1	excinuclease ABC subunit UvrB	-
V7A38_RS07905 (V7A38_07905)	-	1557086..1557541 (-)	456	WP_014025301.1	RNA pyrophosphohydrolase	-
V7A38_RS07910 (V7A38_07910)	def	1557647..1558273 (+)	627	WP_014025302.1	peptide deformylase	-
V7A38_RS07915 (V7A38_07915)	-	1558316..1558561 (-)	246	WP_016170852.1	hypothetical protein	-
V7A38_RS07920 (V7A38_07920)	-	1558697..1559575 (-)	879	WP_014025303.1	HNH endonuclease	-
V7A38_RS07925 (V7A38_07925)	-	1559733..1559894 (-)	162	WP_231844102.1	hypothetical protein	-
V7A38_RS07930 (V7A38_07930)	clpC	1559950..1562196 (-)	2247	WP_341784603.1	AAA family ATPase	Regulator
V7A38_RS07935 (V7A38_07935)	rpoD	1562418..1563800 (-)	1383	WP_003134202.1	RNA polymerase sigma factor RpoD	-
V7A38_RS07945 (V7A38_07945)	dnaG	1563836..1565722 (-)	1887	WP_014025305.1	DNA primase	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 83497.54 Da
• Isoelectric Point: 4.7692

>NTDB_id=943932 V7A38_RS07930 WP_341784603.1 1559950..1562196(-) (clpC) [Lactococcus garvieae strain L7]
MLCQNCKINEATIHLYTNVNGQRKQVDLCQNCYQIMKSGGQESLFAGATNISNNDDPFNPFPDIFQALHGNDQGRTMTPP
TQAGGRGPGGPQNPRGGQAPKGLLEEFGVNITDAARRGEIDPVIGRDSEITRVIEILNRRTKNNPVLIGEPGVGKTAVVE
GLSQKIVDGDVPQKLQNKEVIRLDVVRLVQGTGVRGQFEERMQKLMEEIRKRDDVILFIDEIHEIVGAGSAGEGNMDAGN
ILKPALARAELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVDETITILRGIQKRYEDYHHVKYSDEAILAAANLSN
RYIQDRFLPDKAIDLLDEAGSKKNLTLKFVDPEDIKKRIEQAEVQKNEAMQREDFEKAAHFRDQIAKLRELQSHEISDTD
MPNITEKDIEAIVEEKTHIPVGDLKEKEQTQLINLAEDLKEHVIGQDEAIDKISKAVRRSRVGLGKPNRPIGSFLFVGPT
GVGKTELAKQLAYELFGSRDSMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPDVM
HMFLQILDDGRLTDAQGRTVSFKDAIIIMTSNAGTGKVEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDAIIEFSAL
SKENLLKIVDLMLDEVNAQIAQNDIHLDVTQAVKEKLVDLGYDPKMGARPLRRTIQDNIEDAIADFYIEHPEYKELLADL
VDDKIVIVNKPEEVEATTDTSDNKDEEK

Nucleotide

• Length: 2247 bp

>NTDB_id=943932 V7A38_RS07930 WP_341784603.1 1559950..1562196(-) (clpC) [Lactococcus garvieae strain L7]
ATGCTCTGCCAAAATTGTAAAATAAACGAAGCGACAATTCACCTTTATACAAATGTGAATGGCCAGCGTAAGCAAGTGGA
TCTATGCCAAAACTGTTATCAAATTATGAAATCAGGTGGTCAAGAAAGCTTGTTTGCTGGAGCTACAAATATTTCGAATA
ATGACGATCCTTTTAATCCGTTCCCAGATATTTTCCAAGCTTTACATGGAAATGATCAAGGTCGGACAATGACCCCTCCA
ACACAAGCTGGAGGTCGAGGCCCAGGAGGCCCACAAAATCCTCGTGGAGGCCAAGCACCTAAAGGACTTCTCGAAGAATT
CGGGGTCAACATCACTGATGCTGCACGTCGTGGGGAAATCGATCCTGTTATTGGGCGTGATTCTGAAATTACGCGTGTCA
TCGAAATTCTGAATCGTCGGACAAAAAATAATCCTGTTCTTATCGGAGAACCTGGTGTTGGTAAAACAGCAGTTGTTGAA
GGATTATCCCAAAAAATTGTTGACGGTGACGTACCACAAAAATTACAAAATAAAGAAGTTATTCGTCTGGACGTTGTCAG
ACTCGTCCAAGGTACTGGTGTGCGTGGACAATTTGAAGAGCGCATGCAAAAACTGATGGAAGAGATCCGTAAACGTGATG
ATGTTATCCTCTTCATTGATGAAATTCATGAGATTGTGGGCGCAGGTTCTGCTGGGGAAGGAAATATGGATGCCGGAAAT
ATTCTTAAACCGGCTTTAGCACGTGCCGAACTCCAACTTGTTGGAGCAACAACACTCAATGAATATCGAATTATTGAAAA
GGATGCAGCGCTTGAGCGTCGGATGCAACCTGTTAAAGTTGATGAACCTTCTGTAGATGAGACAATCACAATCTTACGTG
GTATTCAAAAACGTTATGAAGATTATCATCATGTAAAATACTCCGATGAAGCAATCTTAGCTGCTGCAAATCTATCGAAC
CGTTATATTCAAGACCGTTTCCTTCCAGATAAGGCAATTGACTTGCTGGACGAAGCAGGTTCGAAAAAGAATCTCACCCT
CAAATTTGTTGATCCAGAGGACATAAAGAAACGCATTGAGCAAGCAGAAGTGCAAAAAAATGAAGCTATGCAACGTGAAG
ATTTTGAGAAAGCAGCCCATTTCCGTGATCAAATCGCTAAGCTTCGTGAGCTGCAAAGTCATGAAATCTCGGATACTGAT
ATGCCAAATATCACAGAAAAAGATATCGAAGCAATCGTTGAAGAAAAAACGCATATCCCTGTGGGAGATTTGAAAGAAAA
AGAACAAACACAGCTGATTAATCTGGCCGAAGACTTGAAAGAACATGTTATCGGACAAGATGAAGCAATTGATAAAATTT
CGAAAGCCGTGCGTCGTTCACGTGTTGGACTTGGAAAGCCTAATCGTCCTATCGGTTCATTCCTCTTTGTTGGACCGACT
GGTGTAGGGAAGACCGAACTCGCGAAACAATTGGCTTATGAACTCTTTGGTTCTAGGGATAGCATGATTCGTTTTGACAT
GTCGGAATACATGGAAAAACATAGTGTGGCTAAGTTGATTGGAGCTCCTCCAGGATATGTAGGTTATGAAGAAGCTGGTC
AATTGACAGAACGTGTACGTCGTAACCCATACAGCTTAATCTTGTTGGATGAGATTGAGAAAGCCCACCCTGATGTTATG
CATATGTTCTTGCAAATTCTTGATGATGGACGTTTGACAGATGCGCAAGGGCGTACAGTTTCCTTCAAAGATGCCATCAT
CATTATGACATCGAATGCTGGTACAGGTAAGGTTGAAGCAAGTGTTGGTTTTGGTGCTGCACGTGAAGGACGTACAAATT
CAGTACTTGGGGAATTGGGTAATTTCTTTAGTCCGGAATTCATGAATCGTTTTGATGCTATCATTGAATTCTCGGCATTG
AGCAAAGAAAACTTGCTTAAGATTGTGGATTTAATGTTGGATGAAGTGAATGCTCAAATCGCTCAAAATGATATTCATCT
TGATGTCACACAGGCCGTTAAAGAAAAACTTGTTGATCTGGGTTACGATCCGAAAATGGGGGCTCGTCCATTGCGTCGTA
CCATCCAGGATAATATCGAGGATGCGATTGCTGATTTTTATATTGAGCATCCTGAATATAAAGAATTACTGGCAGACTTG
GTCGATGATAAGATTGTTATTGTGAATAAGCCTGAAGAAGTAGAAGCCACAACGGATACATCTGATAATAAAGATGAGGA
GAAATAA

Domains

Predicted by InterproScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (146-266)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (640-710)

• AAA lid domain (AAA_lid_9) (284-383)

• AAA domain (Cdc48 subfamily) (AAA_2) (469-634)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	86.406	99.332	0.858
clpE	Streptococcus mutans UA159	76.424	100	0.771
clpE	Streptococcus pneumoniae TIGR4	77.155	97.727	0.754
clpE	Streptococcus pneumoniae Rx1	77.155	97.727	0.754
clpE	Streptococcus pneumoniae D39	77.155	97.727	0.754
clpE	Streptococcus pneumoniae R6	77.155	97.727	0.754
clpC	Bacillus subtilis subsp. subtilis str. 168	52.809	83.289	0.44
clpC	Streptococcus pneumoniae D39	45.879	85.963	0.394
clpC	Streptococcus pneumoniae Rx1	45.879	85.963	0.394
clpC	Streptococcus pneumoniae TIGR4	45.723	85.963	0.393
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.471	81.952	0.389
clpC	Streptococcus mutans UA159	46.204	82.754	0.382
clpC	Streptococcus thermophilus LMD-9	45.367	83.69	0.38
clpC	Streptococcus thermophilus LMG 18311	45	82.888	0.373