Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ACFIOR_RS12195 Genome accession   NZ_CP170409
Coordinates   2404181..2405026 (-) Length   281 a.a.
NCBI ID   WP_001566903.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t359     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2399181..2410026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOR_RS12160 rpsR 2400166..2400408 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  ACFIOR_RS12165 ssbA 2400460..2400963 (-) 504 WP_168768369.1 single-stranded DNA-binding protein Machinery gene
  ACFIOR_RS12170 rpsF 2400984..2401280 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  ACFIOR_RS12175 - 2401524..2401715 (+) 192 WP_001052483.1 hypothetical protein -
  ACFIOR_RS12180 ychF 2401801..2402898 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  ACFIOR_RS12185 - 2402910..2403113 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  ACFIOR_RS12190 - 2403143..2404024 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  ACFIOR_RS12195 spo0J 2404181..2405026 (-) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein Regulator
  ACFIOR_RS12200 - 2405690..2406793 (+) 1104 WP_000655707.1 PLP-dependent transferase -
  ACFIOR_RS12205 metC 2406790..2407950 (+) 1161 WP_000175852.1 cystathionine beta-lyase MetC -
  ACFIOR_RS12210 - 2407919..2409760 (+) 1842 WP_168768370.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32869.88 Da        Isoelectric Point: 10.0091

>NTDB_id=943485 ACFIOR_RS12195 WP_001566903.1 2404181..2405026(-) (spo0J) [Staphylococcus aureus strain t359]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGTKVDISIKKSVGKISFEFDSQEDFLRIIEQLNRRYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=943485 ACFIOR_RS12195 WP_001566903.1 2404181..2405026(-) (spo0J) [Staphylococcus aureus strain t359]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGAATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGTACCAAAGTAGATATATCAATAAAAAAATCGGTTGGTAAAATCTCATTTGAGTTTGATTCACAAGAAGA
TTTTCTAAGAATAATTGAACAATTAAATCGTAGGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.379

92.883

0.384