Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACFIOR_RS10155 Genome accession   NZ_CP170409
Coordinates   2000430..2001512 (-) Length   360 a.a.
NCBI ID   WP_001548033.1    Uniprot ID   A0A0H2XJ41
Organism   Staphylococcus aureus strain t359     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1995430..2006512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOR_RS10135 - 1996039..1996143 (-) 105 WP_001790092.1 hypothetical protein -
  ACFIOR_RS10140 secA 1996185..1998716 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  ACFIOR_RS10145 hpf 1999130..1999702 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACFIOR_RS10150 - 1999763..2000437 (-) 675 WP_042727547.1 ComF family protein -
  ACFIOR_RS10155 comFA 2000430..2001512 (-) 1083 WP_001548033.1 DEAD/DEAH box helicase Machinery gene
  ACFIOR_RS10160 fakB1 2001876..2002742 (-) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  ACFIOR_RS10165 - 2002886..2003527 (+) 642 WP_000192957.1 YigZ family protein -
  ACFIOR_RS10170 - 2003699..2004754 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  ACFIOR_RS10175 gdpS 2005072..2006142 (+) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42111.65 Da        Isoelectric Point: 9.8307

>NTDB_id=943473 ACFIOR_RS10155 WP_001548033.1 2000430..2001512(-) (comFA) [Staphylococcus aureus strain t359]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=943473 ACFIOR_RS10155 WP_001548033.1 2000430..2001512(-) (comFA) [Staphylococcus aureus strain t359]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCGCGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAAGAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTCCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XJ41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367