Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V6Z91_RS22530 Genome accession   NZ_CP146614
Coordinates   5137431..5139857 (+) Length   808 a.a.
NCBI ID   WP_338761443.1    Uniprot ID   -
Organism   Massilia sp. METH4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5132431..5144857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z91_RS22520 - 5132769..5135771 (+) 3003 WP_338761438.1 TonB-dependent receptor -
  V6Z91_RS22525 - 5135899..5137227 (-) 1329 WP_338761441.1 alpha/beta fold hydrolase -
  V6Z91_RS22530 comA 5137431..5139857 (+) 2427 WP_338761443.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6Z91_RS22535 - 5139992..5140882 (-) 891 WP_338761445.1 DJ-1/PfpI family protein -
  V6Z91_RS22540 - 5141050..5142135 (+) 1086 WP_338761447.1 histidine kinase -
  V6Z91_RS22545 - 5142147..5142866 (+) 720 WP_338761450.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 87128.45 Da        Isoelectric Point: 10.0275

>NTDB_id=943407 V6Z91_RS22530 WP_338761443.1 5137431..5139857(+) (comA) [Massilia sp. METH4]
MRSAILGFVAGAAFLQSQAALPAHPLYALVALLVLAASIARLAHGWARVAAGTACACALGFYWAALLASHALAPELAKAD
EGRDVFVTGTIAMLPNRTSHFTRFVFDVERAEGLRVPPRIALSWYAGFRGDVQAVPELRPGERWRLKMRLQRPHGNANPH
GFEYELWLLEQGIRATGYVRLEGPHERLDEFVFTPRNAVERMRDSLRGKIGRALDGREYAAVIVALVIGDQRGIDQEDWQ
AFARTGVSHLVSISGLHITMIAGLVAWAASACWRRSLFVRHAQWPLLLPAQKVGALAGMLAALVYVALAGFGVPAQRTLT
MLCVVALALWTDRIACVSHVLALAAGLVVLIDPWAVMWPGFWLSFGAVAVILFATVGRTAVYKNAGDPAAIDPGARRGTP
LTRRQRLAASLRAAATTQYAVTLGLVPLTMLLFAQVSIVSPFANAIAIPVVSLLVTPLALAGGLLPEPLATPLLVLAHEL
MRQLAGLLQWFSAAPLAVYSAPVPPWWLFAIALAGTLWLLAPRGWPVRWLGAACWVPLLAAQPDAPAPGTVRIVAFDVGQ
GMAVLVETAGHRLLYDTGPSYGPEANAGSRVIVPYLRARGIGWLDGIVVSHGDADHAGGALAVLKEVKAGWMLSSLAGSH
AVALAAARHRPCEAGQRWEWDGIRFEMLHPTAASYADAALKTNGRSCTLRIVAPGGTVLLPGDIEARQEAELVARSGDGL
RADVLLVPHHGSGTSSTAGFLDAVRPRVAILQVGYRNRYRHPKREVMERYDERRVHVVRTDEAGAVLITVADGVSLQQYR
RLRPRYWH

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=943407 V6Z91_RS22530 WP_338761443.1 5137431..5139857(+) (comA) [Massilia sp. METH4]
ATGCGCAGCGCGATCCTCGGCTTTGTCGCCGGTGCGGCGTTCCTGCAATCGCAGGCCGCGCTGCCGGCTCACCCCCTGTA
TGCACTCGTGGCGCTGCTGGTGCTCGCCGCGTCGATCGCCCGGCTCGCGCACGGGTGGGCGAGGGTGGCGGCAGGCACGG
CATGCGCATGTGCCCTGGGTTTTTACTGGGCCGCGCTGCTGGCATCGCACGCGCTGGCGCCCGAGCTGGCCAAGGCCGAC
GAGGGCCGCGATGTGTTCGTCACCGGCACGATTGCCATGTTACCGAACCGTACCAGCCATTTCACGCGGTTCGTCTTCGA
CGTCGAACGCGCGGAGGGTCTGCGCGTGCCGCCGCGCATCGCGCTGTCGTGGTATGCCGGGTTTCGTGGCGATGTACAAG
CGGTGCCCGAGCTGCGCCCCGGCGAGCGCTGGCGGCTGAAGATGCGGCTGCAACGGCCGCACGGCAATGCGAATCCGCAC
GGGTTCGAGTACGAGCTGTGGCTGCTGGAACAGGGCATCCGCGCCACCGGCTATGTGCGGCTCGAAGGACCGCACGAGCG
GCTGGACGAGTTCGTGTTCACGCCGCGCAATGCCGTCGAGCGCATGCGCGACAGCCTGCGCGGCAAGATAGGGCGCGCGC
TCGACGGGCGCGAATATGCCGCCGTGATCGTTGCGCTGGTGATCGGCGACCAGCGCGGCATCGACCAGGAAGACTGGCAG
GCATTCGCCCGCACCGGCGTCAGCCACCTGGTGTCGATCTCCGGGCTGCACATCACGATGATCGCCGGCCTGGTGGCCTG
GGCGGCGTCCGCATGTTGGCGCCGCTCGTTGTTCGTCCGCCATGCGCAGTGGCCGCTGCTGTTGCCGGCACAGAAGGTGG
GGGCGCTGGCCGGCATGTTGGCGGCACTCGTGTACGTGGCGCTTGCCGGCTTCGGCGTTCCCGCCCAGCGCACGCTGACC
ATGCTGTGCGTGGTCGCGCTGGCGCTGTGGACGGACCGGATCGCCTGTGTGTCGCACGTGCTGGCGCTTGCGGCCGGCCT
GGTGGTGCTGATCGATCCCTGGGCCGTGATGTGGCCTGGTTTCTGGCTCTCTTTCGGCGCCGTCGCCGTCATCCTGTTTG
CCACCGTCGGGCGTACCGCGGTGTACAAGAATGCCGGCGACCCGGCCGCCATCGATCCCGGCGCGCGGCGCGGTACGCCG
CTCACCCGCCGCCAGCGCCTGGCCGCGTCACTGCGCGCCGCGGCGACGACGCAGTATGCCGTCACCCTCGGCCTGGTGCC
GTTGACGATGCTGCTGTTCGCGCAGGTGTCGATCGTCAGTCCCTTCGCCAATGCGATCGCGATCCCCGTCGTCAGCCTGC
TTGTCACGCCGCTCGCCCTGGCCGGCGGCTTGCTGCCGGAACCGCTGGCCACGCCGCTGCTGGTGCTGGCGCACGAACTG
ATGCGGCAGCTGGCCGGCCTGCTGCAATGGTTCAGCGCCGCGCCGCTCGCCGTGTACAGTGCGCCGGTGCCGCCCTGGTG
GCTGTTCGCCATTGCGCTGGCCGGCACGCTCTGGCTGCTGGCGCCGCGCGGCTGGCCGGTGCGCTGGCTGGGCGCCGCCT
GCTGGGTGCCGCTGCTCGCCGCCCAGCCGGACGCGCCCGCGCCCGGCACGGTCCGCATCGTGGCGTTCGACGTGGGGCAG
GGGATGGCCGTGCTGGTCGAAACGGCGGGCCACCGGCTGCTGTACGACACCGGGCCATCGTATGGACCGGAGGCGAATGC
CGGCAGCCGCGTAATCGTGCCCTACCTGCGGGCACGGGGCATTGGTTGGCTCGACGGCATTGTCGTCAGCCATGGCGACG
CCGATCACGCGGGCGGCGCCCTGGCGGTGCTCAAGGAAGTGAAGGCGGGCTGGATGCTGTCCTCGCTGGCGGGCAGCCAT
GCGGTGGCGCTGGCCGCGGCGCGGCACCGGCCTTGCGAAGCGGGCCAGCGCTGGGAATGGGATGGCATCCGTTTCGAGAT
GCTGCATCCGACGGCTGCGAGCTATGCCGATGCCGCGCTGAAGACCAATGGACGCAGTTGCACGCTGCGGATCGTGGCTC
CCGGGGGCACGGTACTGCTGCCCGGTGACATCGAAGCAAGGCAGGAAGCGGAACTGGTCGCAAGATCGGGAGATGGCTTG
CGTGCAGACGTGCTGCTGGTGCCGCACCACGGCAGCGGCACGTCGTCCACGGCCGGGTTCCTCGACGCGGTACGCCCCCG
AGTGGCCATTTTACAAGTCGGCTACCGCAATCGCTACCGGCATCCAAAGCGCGAAGTCATGGAGCGCTACGACGAGCGCC
GTGTCCATGTCGTGCGTACCGACGAAGCCGGCGCCGTGCTGATCACCGTCGCGGATGGCGTCTCGCTTCAGCAATACCGG
CGCTTGCGCCCACGCTACTGGCATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(24-180)

Competence protein (Competence)

(226-524)

Metallo-beta-lactamase superfamily (Lactamase_B)

(558-750)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.121

100

0.496