Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   V6Z91_RS12810 Genome accession   NZ_CP146614
Coordinates   2880852..2881910 (-) Length   352 a.a.
NCBI ID   WP_338770855.1    Uniprot ID   -
Organism   Massilia sp. METH4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2875852..2886910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z91_RS12795 rpoH 2877895..2878794 (-) 900 WP_338770852.1 RNA polymerase sigma factor RpoH -
  V6Z91_RS12800 ftsX 2879266..2880180 (-) 915 WP_338770853.1 permease-like cell division protein FtsX -
  V6Z91_RS12805 - 2880177..2880836 (-) 660 WP_338770854.1 ATP-binding cassette domain-containing protein -
  V6Z91_RS12810 pilA 2880852..2881910 (-) 1059 WP_338770855.1 signal recognition particle-docking protein FtsY Machinery gene
  V6Z91_RS12815 - 2882225..2883178 (-) 954 WP_338770856.1 MerR family transcriptional regulator -
  V6Z91_RS12820 - 2883410..2884327 (-) 918 WP_338770857.1 AEC family transporter -
  V6Z91_RS12825 - 2884350..2885324 (-) 975 WP_338770859.1 TauD/TfdA family dioxygenase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37632.42 Da        Isoelectric Point: 5.7477

>NTDB_id=943401 V6Z91_RS12810 WP_338770855.1 2880852..2881910(-) (pilA) [Massilia sp. METH4]
MFSFFKKKTVTPDVPPAAPAEQAVVASATPAVAPENQAAEPLAFEVETAPRPEPKQSWMSRLKAGLSKTSANLSLLFVGA
RIDDDLYDELEAALLMSDAGIEATSYLLDALKRKVKDDKLTDAADVKTALKELMIDLLRPLEKPFVLGRHQPTVMMISGV
NGAGKTTTIGKLAKHMQAHGQSVLLAAGDTFRAAAREQLMIWGQRNNVTVISQESGDPAAVSYDAVQSGKAKGTNVVMID
TAGRLPTQLHLMNELQKIKRVIGKGMDGAPHETLLVIDGNTGQNALTQVKAFDDALQLSGLIITKLDGTAKGGVLAAIAR
VRPVPVYFIGIGEKIEDLQPFDAEEFVEALLA

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=943401 V6Z91_RS12810 WP_338770855.1 2880852..2881910(-) (pilA) [Massilia sp. METH4]
ATGTTCAGCTTCTTCAAGAAAAAAACCGTCACGCCCGACGTGCCGCCTGCCGCGCCTGCCGAGCAGGCCGTCGTGGCATC
AGCCACCCCCGCCGTGGCCCCCGAGAACCAGGCCGCCGAGCCGCTCGCTTTCGAAGTCGAGACGGCGCCGCGCCCGGAAC
CAAAACAATCCTGGATGAGCCGGCTGAAAGCCGGGCTGTCGAAAACATCGGCGAACCTGTCGCTGCTGTTCGTCGGCGCG
CGCATCGACGACGACCTGTACGACGAGCTGGAAGCGGCGCTCCTGATGTCCGACGCCGGCATCGAAGCCACCAGCTACCT
GCTCGATGCCTTGAAGCGCAAGGTCAAGGACGACAAGCTGACCGACGCGGCGGACGTGAAGACGGCGCTCAAGGAATTGA
TGATCGACCTCCTGCGCCCGCTCGAGAAACCCTTCGTGCTGGGCCGCCACCAACCTACCGTGATGATGATTTCCGGCGTC
AATGGCGCCGGCAAGACCACCACGATCGGCAAGCTTGCCAAGCACATGCAGGCGCACGGCCAATCCGTGCTGCTGGCCGC
CGGCGACACGTTCCGCGCCGCCGCCCGCGAACAGCTGATGATCTGGGGCCAGCGCAACAACGTGACGGTGATCTCCCAGG
AATCGGGCGATCCGGCCGCCGTGTCGTACGACGCGGTGCAGTCCGGCAAGGCGAAAGGCACCAATGTGGTGATGATCGAC
ACGGCCGGCCGCCTGCCCACCCAGCTGCACCTGATGAACGAGCTGCAGAAGATCAAGCGCGTGATCGGCAAGGGCATGGA
TGGCGCGCCGCATGAAACGCTGCTCGTCATCGACGGCAACACGGGGCAGAACGCGCTGACGCAGGTGAAGGCCTTCGACG
ATGCCTTGCAACTTTCCGGCCTGATCATCACCAAGCTCGACGGTACTGCCAAGGGTGGCGTGCTGGCCGCGATCGCGCGT
GTGCGCCCGGTACCGGTGTACTTCATCGGCATCGGCGAAAAGATCGAAGACCTGCAACCGTTCGACGCCGAGGAATTCGT
CGAAGCCCTGCTCGCTTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(79-132)

SRP54-type protein, GTPase domain (SRP54)

(152-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

56.16

99.148

0.557