Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   V8687_RS01835 Genome accession   NZ_CP146610
Coordinates   418311..419837 (+) Length   508 a.a.
NCBI ID   WP_338726395.1    Uniprot ID   -
Organism   Shewanella baltica strain TMP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 413311..424837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8687_RS01825 (V8687_01825) - 414865..416649 (-) 1785 WP_338728648.1 GGDEF domain-containing protein -
  V8687_RS01830 (V8687_01830) - 416695..417723 (-) 1029 WP_006084444.1 ABC transporter substrate-binding protein -
  V8687_RS01835 (V8687_01835) comM 418311..419837 (+) 1527 WP_338726395.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  V8687_RS01840 (V8687_01840) - 419947..420849 (+) 903 WP_011848082.1 acyltransferase -
  V8687_RS01845 (V8687_01845) - 420857..421801 (+) 945 WP_338726396.1 acyltransferase -
  V8687_RS01850 (V8687_01850) - 421820..422314 (-) 495 WP_338726397.1 DUF523 domain-containing protein -
  V8687_RS01855 (V8687_01855) - 422614..423381 (+) 768 WP_012090443.1 GntR family transcriptional regulator -
  V8687_RS01860 (V8687_01860) prpB 423439..424317 (+) 879 WP_006083473.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55532.86 Da        Isoelectric Point: 8.5969

>NTDB_id=943347 V8687_RS01835 WP_338726395.1 418311..419837(+) (comM) [Shewanella baltica strain TMP1]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPANSLKNLEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLILPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWISQETPESRTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRSPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDSQHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQTA
PQTETSQDIAKRVKRARELQLARSGVLNSELTGKQLKRYSGISDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQV
PNTERRHIAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=943347 V8687_RS01835 WP_338726395.1 418311..419837(+) (comM) [Shewanella baltica strain TMP1]
ATGGCGATTGCCTGCGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCTCCCCAAGTCACAGTTGAAGTGCATCTGAGTAA
CGGCTTACCAGCATTTAATCTAGTGGGATTACCCGAAGCGTCGGTAAAAGAAGCCCGCGAGCGGGTGCGCAGCGCACTGA
TCAATGCAGGATTCGAGTTTCCGATGCGGCGGATAACCGTTAACCTTGCGCCAGCAGATTTACCTAAACAAGGTGGCCGC
TACGATTTACCCATAGCCGTAGGCATATTAGCCGCCTCGGAACAAATCCCTGCTAATAGTTTAAAAAATCTTGAGTTTGT
CGGCGAGTTGGCACTGTCTGGGCACATACGTTATTGCCAAGGCTTATTACCCGCGATTATCGCCGCTAAGCGCCAAGACC
ATACCTTAATATTGCCGCTGGATAATCGCCACGATGCCGAGTTAGTCGGCTATCCCAATGTGTTGTTTGGCTCGCACCTG
CAGAGTCTGGCCGCTTATTTACAGGGGCAAAACCAACTGCCGACGTTAGCGCCGCAATTAGAATGGATAAGCCAAGAGAC
GCCCGAGTCCCGTACTTGCCTGAGCGATGTGATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCGGCGGGAA
ACCATAACCTCCTGATGCTTGGCCCTCCAGGTACAGGCAAAACCATGCTTGCCAGCCGCATGATGGCGCTTTTACCCGCG
CTTAATTATGAGGAAGCATTAGAAGTAGCGGCGATTCATTCCGTTGCCGGACTCGACATTAAGCCGCAGCATTTTTTGCA
GCGACCATTTCGCTCGCCACACCACACAAGTTCGTCGATATCCCTCGTGGGTGGCGGCAGTATCCCCAAACCCGGTGAAA
TTTCCCTCGCCCACCGTGGCGTGCTGTTTTTAGATGAAGTGGCTGAATTTCCTCGGAAAGTCTTAGATTGCCTGCGCGAG
CCGATGGAGACCGGCGAAGTGGTGATTTCCCGCGCAGCCGCTAAGCTGACATTTTTGAGTCGCTTCCAACTAATTGCGGC
GATGAATCCCAGCCCGAGCGGTGATATTGATAGCCAACACAGATCGAGTCCCGAACAGATTCAACGTTATCTTTCACGGC
TTTCGGGCCCATTTCTCGACCGTTTCGATTTAACCATTGAAGTGCCCAAACTCCCCGCCGGCACCTTGACTCAAACCGCG
CCGCAAACAGAAACCAGCCAAGATATCGCCAAGCGGGTGAAACGGGCGCGTGAGCTGCAACTCGCACGTTCAGGTGTACT
CAATAGCGAGCTCACAGGGAAGCAATTGAAACGCTATAGCGGGATCAGTGATGCTGATTTAGTGTTTTTGGAACAAAGCG
TGGTAAAGCTTGGCCTCTCGGTTCGCAGCTTTCATCGTATACAAAGAGTCGCGCGCACTATTGCCGATCTGGAACAAGTG
CCTAACACAGAACGCCGCCATATTGCCCAAGCACTGGGTTATCGCGCTATGGATAGATTACTCGCCCGCTTATCCCAGCA
ATATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.863

100

0.571
  comM Haemophilus influenzae Rd KW20

56.299

100

0.563
  comM Glaesserella parasuis strain SC1401

56.213

99.803

0.561
  comM Vibrio campbellii strain DS40M4

54.669

100

0.553
  comM Legionella pneumophila str. Paris

45.866

100

0.459
  comM Legionella pneumophila strain ERS1305867

45.866

100

0.459
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.75

97.638

0.427