Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ACFIOO_RS05630 Genome accession   NZ_CP170406
Coordinates   1189243..1190394 (+) Length   383 a.a.
NCBI ID   WP_054190187.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21635     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1184243..1195394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOO_RS05605 yfmH 1185071..1186357 (+) 1287 WP_054190189.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACFIOO_RS05610 ymfI 1186357..1187061 (+) 705 WP_054190188.1 elongation factor P 5-aminopentanone reductase -
  ACFIOO_RS05615 - 1187166..1187993 (+) 828 WP_000214890.1 YmfK family protein -
  ACFIOO_RS05620 - 1188012..1188404 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  ACFIOO_RS05625 pgsA 1188438..1189016 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFIOO_RS05630 cinA 1189243..1190394 (+) 1152 WP_054190187.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ACFIOO_RS05635 recA 1190559..1191602 (+) 1044 WP_000368168.1 recombinase RecA Machinery gene
  ACFIOO_RS05640 rny 1191956..1193515 (+) 1560 WP_001050913.1 ribonuclease Y -
  ACFIOO_RS05645 - 1193812..1194027 (-) 216 WP_000026308.1 hypothetical protein -
  ACFIOO_RS05650 - 1194201..1194998 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43262.44 Da        Isoelectric Point: 5.7449

>NTDB_id=943347 ACFIOO_RS05630 WP_054190187.1 1189243..1190394(+) (cinA) [Staphylococcus aureus strain t21635]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHYINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGNHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKRIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINEPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEEFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=943347 ACFIOO_RS05630 WP_054190187.1 1189243..1190394(+) (cinA) [Staphylococcus aureus strain t21635]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTATATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAATCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGATCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAGAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAATGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATGAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGGAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.295

100

0.428