Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   V9W64_RS08600 Genome accession   NZ_CP146598
Coordinates   1833423..1836659 (-) Length   1078 a.a.
NCBI ID   WP_274584828.1    Uniprot ID   A0A9X4E150
Organism   Neisseria leonii strain 51.81     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1828423..1841659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W64_RS08590 (V9W64_08590) uvrA 1829623..1832460 (-) 2838 WP_274584827.1 excinuclease ABC subunit UvrA -
  V9W64_RS08595 (V9W64_08595) - 1832580..1832936 (-) 357 WP_274584986.1 YkvA family protein -
  V9W64_RS08600 (V9W64_08600) recC 1833423..1836659 (-) 3237 WP_274584828.1 exodeoxyribonuclease V subunit gamma Machinery gene
  V9W64_RS08605 (V9W64_08605) trmB 1837039..1837743 (+) 705 WP_274584829.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V9W64_RS08610 (V9W64_08610) trmA 1837745..1838842 (+) 1098 WP_274584830.1 tRNA (uridine(54)-C5)-methyltransferase TrmA -
  V9W64_RS08615 (V9W64_08615) - 1838878..1840200 (+) 1323 WP_274584987.1 aldehyde dehydrogenase family protein -
  V9W64_RS08620 (V9W64_08620) - 1840175..1840915 (+) 741 WP_274584831.1 toxin-antitoxin system YwqK family antitoxin -

Sequence

Protein


Download         Length: 1078 a.a.        Molecular weight: 120296.87 Da        Isoelectric Point: 6.3021

>NTDB_id=943268 V9W64_RS08600 WP_274584828.1 1833423..1836659(-) (recC) [Neisseria leonii strain 51.81]
MLYLYQSNRLEDLAGMLHAVHRAQPLSEPLAAEDILVQSQGMRRYLTRFLAGRDGIAANLNFCLPAKFHWHLMRQALPDL
PALSPFAPGVMRWRLLKRFSDGLDGSGFTAARAALSGYLAGGSLAAYQLAGQLADIFDQYLVYRPEWLDAWQQNRTLNLG
SDEIWQAELWRYLNEDSGSSLHRVGMWRALLAALSASEPERIAVKLPPRLSVFGISVMAPAHLQLLQAVSQHTDVHIFAL
NPSEHYWGNIISPAQILQNGVSDGLEAAGHPLLASLGKQGRDFFDALSQAEPQLALAPYPDAPVSDSLLHRLQYDIQTLQ
LPEPRHTPDNSIRIVSAHSPLRELQILKDHLLDLLEQHPDWQPHDIAVLTPDIEPYHPFIEAVFGQTAGSGRALPYSVSD
IKIRRRRPLFDALAQALAVLESRFEIDTVLQLLGHEAVLSRFGLTRQDLPLLHEAAAELNIRWGWDAQMRGGNGLYTWQQ
GLDSMTAGWLLPENGGLWQHTAAWHTGTGHLPVLSRFHQFARTLSRHYHLWQTPADTVGWIDRLRTLKNELFQPAESDQA
AEIQLEEALADWQAEAGLAGFSGTLPPETVLRHIARFLDSESEAGFLRSGITICGMVPMRSLPFKAVCLLGLNDKTFPRN
TKAAAFDLIAQHPRAGDRARRDDDRYLFLEALMSAREHLYLSYIGRSIRNNDELAPSPLVSELADTLDSMCGHSSGTWQK
QLIEQHPLQPFSARYFQNGPLISSRSDYAQARQRPSETAPFFTPQENGEDAPSGEPPVIRQADLIEFWQNPPRYWLRHRL
DWRAPWQSGDSEAAEPFEPPQADALADAYTDARRRHLDFAAAAEPLYARSQLPEAELGKLWQQQYEAQARRLDGRLLSAA
PLPDTPYRLHIGGMILEGSLDNLTAEGRITTGRESTAHFIARLLQHLILNAVRPQNMAHFAGHHLTLGQETATFAALPDA
GTAADLLVPWLDYYRQGQTRPLPFVPHTALKAAQAFIKPESKSGKTPEERLNAAAYQSYFGRNSGQTARADYPENATAFA
RRTPPPDDPLFARILHDTLIPTLTACGGTDTQPSRPSE

Nucleotide


Download         Length: 3237 bp        

>NTDB_id=943268 V9W64_RS08600 WP_274584828.1 1833423..1836659(-) (recC) [Neisseria leonii strain 51.81]
ATGCTGTATCTGTACCAGTCCAACCGCCTCGAAGACCTTGCCGGTATGCTGCACGCCGTCCACCGCGCGCAGCCGCTCTC
CGAACCTTTGGCCGCCGAAGACATTCTGGTGCAGAGTCAGGGAATGCGCCGTTATCTCACCCGTTTTCTGGCCGGACGCG
ACGGCATCGCCGCCAATCTCAATTTCTGCCTGCCCGCCAAATTCCACTGGCATCTGATGCGCCAAGCCCTGCCCGACCTG
CCCGCGCTCAGTCCCTTTGCACCCGGCGTCATGCGCTGGCGGCTGCTGAAACGGTTTTCAGACGGCCTCGACGGCAGCGG
TTTCACAGCCGCCCGTGCCGCATTGAGCGGCTATCTGGCGGGCGGCAGCCTGGCCGCATATCAGCTGGCCGGACAATTGG
CCGACATTTTCGACCAATATCTGGTTTACCGTCCCGAATGGCTCGATGCGTGGCAGCAAAACCGTACGCTGAATCTGGGC
AGCGACGAAATCTGGCAGGCCGAATTGTGGCGTTATCTGAATGAAGACAGCGGCAGCAGTCTGCACCGCGTGGGCATGTG
GCGTGCTCTGCTGGCCGCCTTGTCGGCTTCGGAGCCGGAGCGTATTGCGGTGAAACTGCCGCCGCGCCTGTCCGTATTCG
GCATTTCCGTAATGGCGCCGGCACACCTGCAACTGCTCCAAGCCGTTTCGCAGCACACCGACGTACACATTTTCGCCCTC
AATCCGAGCGAACATTATTGGGGCAACATCATCAGCCCGGCACAAATCCTGCAAAACGGCGTTTCAGACGGCCTCGAAGC
CGCCGGACACCCGCTTTTGGCCTCCTTGGGCAAACAGGGGCGCGACTTTTTCGACGCACTCAGTCAGGCCGAGCCGCAGC
TTGCCCTTGCCCCCTATCCCGATGCCCCCGTCTCGGACAGCCTGCTGCACCGCCTGCAATACGATATTCAAACCCTGCAA
CTGCCCGAACCGCGCCACACGCCCGACAACAGCATCCGCATCGTCTCAGCCCACAGCCCGCTGCGCGAATTGCAGATTCT
GAAAGACCACCTGCTCGACCTGCTCGAACAACACCCCGACTGGCAGCCGCACGACATCGCCGTCCTCACGCCCGACATCG
AACCCTACCACCCGTTTATCGAAGCCGTTTTCGGCCAGACCGCCGGCAGCGGCCGCGCCCTGCCGTATTCGGTATCCGAC
ATCAAAATCCGCCGCCGCCGTCCGCTGTTCGACGCATTGGCACAAGCACTGGCGGTATTGGAAAGCCGTTTTGAAATCGA
CACCGTGCTGCAACTGCTCGGCCACGAAGCCGTCTTGTCCCGCTTCGGCCTGACCCGTCAGGACCTGCCGCTGCTGCACG
AAGCGGCGGCCGAACTCAATATCCGCTGGGGCTGGGACGCGCAGATGCGCGGCGGCAACGGCCTCTACACCTGGCAGCAG
GGCCTGGACAGCATGACCGCAGGCTGGCTGCTGCCCGAAAACGGCGGCCTGTGGCAGCACACCGCCGCCTGGCATACCGG
CACCGGCCACCTGCCCGTTTTAAGCCGTTTCCACCAATTCGCCCGCACCCTGAGCCGCCATTATCACCTCTGGCAGACTC
CGGCCGATACCGTCGGCTGGATTGATCGGCTGCGTACCTTGAAAAACGAACTGTTCCAACCGGCCGAAAGCGATCAGGCT
GCCGAAATACAGCTGGAAGAAGCCTTGGCCGACTGGCAGGCCGAAGCCGGACTGGCCGGTTTTTCGGGCACACTGCCGCC
GGAAACCGTTTTGCGCCACATCGCCCGTTTTCTCGACAGCGAAAGCGAAGCAGGCTTTTTGCGCAGCGGCATCACCATTT
GCGGCATGGTACCGATGCGCAGTCTGCCGTTTAAGGCCGTCTGTCTCTTGGGCTTGAACGACAAAACCTTCCCGCGCAAC
ACCAAAGCCGCCGCTTTCGACCTGATTGCGCAGCACCCGCGCGCCGGCGACCGCGCCCGCCGCGACGACGACCGCTACCT
GTTTCTCGAAGCCCTGATGAGCGCGCGCGAACATCTTTATCTGTCCTACATCGGCCGCAGCATACGCAACAACGACGAAC
TCGCCCCCTCGCCGCTGGTCAGCGAACTGGCCGACACGCTGGACAGTATGTGCGGCCACAGCAGCGGCACTTGGCAGAAA
CAGCTTATCGAACAGCACCCGCTGCAACCCTTTTCCGCACGCTATTTCCAAAACGGCCCGCTCATCAGCAGCCGCAGCGA
TTATGCGCAGGCCCGACAAAGGCCGTCTGAAACCGCCCCGTTTTTCACGCCGCAGGAAAACGGCGAGGACGCACCAAGCG
GCGAACCGCCCGTCATCCGTCAGGCCGACCTGATCGAATTCTGGCAAAACCCGCCGCGCTACTGGCTGCGCCACCGTCTC
GACTGGCGCGCCCCGTGGCAGAGCGGCGACAGCGAGGCCGCCGAACCCTTCGAGCCGCCTCAGGCCGATGCCCTAGCCGA
TGCCTACACCGACGCCCGCCGCCGCCATCTCGACTTTGCCGCAGCCGCCGAACCGCTGTACGCCCGTTCGCAACTGCCCG
AAGCCGAATTGGGCAAACTGTGGCAGCAGCAATACGAAGCCCAAGCCCGCCGCCTCGACGGCCGCCTGCTCTCCGCCGCT
CCCCTGCCCGACACCCCCTACCGCCTGCATATCGGCGGCATGATTCTCGAAGGCTCACTCGACAACCTCACCGCCGAAGG
CCGCATCACCACAGGCCGCGAAAGCACCGCCCACTTCATTGCCCGCCTGCTGCAACACCTGATTCTGAATGCCGTGCGCC
CGCAAAATATGGCCCATTTTGCCGGCCATCATCTGACTCTCGGCCAAGAAACCGCCACATTCGCCGCCCTGCCCGATGCC
GGCACGGCCGCCGACCTGCTCGTACCGTGGCTCGATTATTACCGCCAAGGACAAACCCGTCCGCTGCCTTTTGTCCCGCA
CACCGCCTTGAAAGCCGCCCAAGCCTTTATCAAACCGGAAAGCAAAAGCGGCAAAACACCCGAAGAACGCCTGAATGCCG
CCGCCTACCAAAGCTATTTCGGCCGCAACAGCGGTCAAACCGCCCGCGCCGACTATCCCGAAAACGCCACCGCCTTCGCC
CGCCGAACCCCGCCGCCCGATGACCCGCTGTTTGCCCGAATCCTGCACGATACCCTGATCCCCACCCTGACCGCCTGCGG
CGGTACGGACACACAGCCATCAAGGCCGTCTGAATGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-317)

RecC C-terminal domain (RecC_C)

(778-995)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

51.993

100

0.52