Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   V9W64_RS00875 Genome accession   NZ_CP146598
Coordinates   182071..183834 (-) Length   587 a.a.
NCBI ID   WP_274584252.1    Uniprot ID   A0A9X4E3D5
Organism   Neisseria leonii strain 51.81     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 177071..188834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W64_RS00850 (V9W64_00850) - 177500..178468 (+) 969 WP_274584247.1 class 1 fructose-bisphosphatase -
  V9W64_RS00855 (V9W64_00855) - 178575..179459 (+) 885 WP_274584248.1 DMT family transporter -
  V9W64_RS00860 (V9W64_00860) grxD 179535..179843 (+) 309 WP_274584249.1 Grx4 family monothiol glutaredoxin -
  V9W64_RS00865 (V9W64_00865) rep 179924..181930 (+) 2007 WP_274584250.1 DNA helicase Rep -
  V9W64_RS00870 (V9W64_00870) - 181932..182126 (+) 195 WP_274584251.1 hypothetical protein -
  V9W64_RS00875 (V9W64_00875) recD 182071..183834 (-) 1764 WP_274584252.1 exodeoxyribonuclease V subunit alpha Machinery gene
  V9W64_RS00880 (V9W64_00880) - 183999..184520 (+) 522 WP_274571437.1 hypothetical protein -
  V9W64_RS00885 (V9W64_00885) - 184549..185289 (+) 741 WP_274571436.1 MarC family protein -
  V9W64_RS00890 (V9W64_00890) - 185360..185965 (-) 606 WP_274571435.1 DUF4230 domain-containing protein -
  V9W64_RS00895 (V9W64_00895) - 186198..187223 (-) 1026 WP_274571434.1 cation diffusion facilitator family transporter -
  V9W64_RS00900 (V9W64_00900) - 187443..187832 (+) 390 WP_274571433.1 MerR family DNA-binding protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 63283.71 Da        Isoelectric Point: 7.7629

>NTDB_id=943253 V9W64_RS00875 WP_274584252.1 182071..183834(-) (recD) [Neisseria leonii strain 51.81]
MNSGEWAVQAAQAANDFLARHAPQVAEICAPFVRRLFAEWQNGHSYLDLTEAERLQLAAAVPIVGMRGDTPLQLWGRRLF
LGRVWQLERDLASELLRLSAAVLPQPGEAAAAARLAAWFPDAGSRAQKEAAALALLKPLMLITGGPGTGKTTTVAKLLAL
LCDGRETPPRIALAAPTGKAAAHMARALHQALARFEPPETVRGHLAALSGQTVHRLLKLRPPQMLPAFDGRKPLPLDILV
VDEASMLDMSLLLSLLRAVPTGCRVVLLGDENQLPSVGAGAVLSALSQPTMLDGETAAVWQRLLQTAQLPAVQTAAEPPP
LASQIMRLTVSHRFGDDSGLGCLARAVASGEDDHAWAQFARFPQELAAGEAVLESRIPAFYAAQTVYWQAVDGGSTEAAF
AHQADMVMLTARRQDAAAFNAAYRRYLQQVRGVAADQVWFAGQMIMVEENHYPLGVFNGDIGLVLPDAQGQLAAYFPSAQ
GLRMLALSRLPACGDAFALTVHKSQGSEYREVWLYAPDAVSDGLTRALLYTAVTRARERFRFIGGESVFRRACLHNETRR
TALRALLAKLSAEQNTTARPNPPPPAD

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=943253 V9W64_RS00875 WP_274584252.1 182071..183834(-) (recD) [Neisseria leonii strain 51.81]
ATGAACAGCGGAGAATGGGCGGTACAGGCGGCACAGGCCGCAAATGATTTTCTTGCACGGCACGCGCCGCAGGTAGCGGA
GATTTGCGCGCCGTTTGTCCGCCGTCTGTTTGCCGAATGGCAGAACGGGCACAGTTATCTCGATTTGACGGAAGCGGAAC
GGTTGCAGTTGGCCGCTGCGGTGCCTATTGTCGGTATGCGCGGCGACACGCCGTTGCAGTTGTGGGGACGGCGGCTGTTT
TTGGGACGGGTGTGGCAGCTGGAACGCGATTTGGCATCGGAGCTGCTGCGCCTTTCGGCTGCGGTGCTGCCGCAGCCCGG
CGAAGCGGCGGCTGCGGCGCGTTTGGCCGCATGGTTTCCCGATGCGGGCAGCCGTGCGCAAAAAGAAGCGGCCGCTTTGG
CATTATTAAAGCCGCTGATGCTGATTACGGGCGGGCCGGGAACGGGGAAAACGACGACGGTGGCGAAACTGCTGGCCTTG
TTGTGCGACGGCAGAGAAACGCCGCCGCGCATTGCCTTGGCCGCACCGACGGGCAAGGCCGCCGCGCATATGGCGCGCGC
CCTGCATCAGGCTTTGGCGCGTTTTGAACCACCCGAAACGGTGCGCGGCCATCTGGCCGCTTTGTCGGGGCAGACGGTAC
ACCGCCTGCTCAAACTGCGTCCGCCGCAAATGCTGCCCGCGTTTGACGGCAGAAAGCCGCTGCCGTTGGATATTCTGGTG
GTGGACGAAGCCTCGATGCTGGATATGTCGTTACTGCTGTCGCTGCTGCGTGCCGTGCCGACGGGCTGCCGCGTGGTATT
GCTGGGCGATGAAAACCAGCTGCCTTCGGTGGGCGCGGGCGCGGTATTGTCCGCGCTTTCGCAACCCACGATGTTGGACG
GCGAAACTGCCGCTGTGTGGCAGCGTTTGCTGCAAACCGCCCAACTGCCCGCTGTTCAGACGGCCGCTGAACCGCCGCCG
CTGGCTTCGCAGATTATGCGGCTGACGGTCAGCCACCGTTTCGGCGACGACAGCGGCCTGGGCTGTCTGGCGCGTGCCGT
GGCATCAGGCGAAGACGACCATGCGTGGGCGCAGTTTGCCCGTTTCCCGCAGGAATTGGCGGCAGGAGAGGCCGTCTTGG
AAAGCCGGATTCCTGCTTTTTATGCCGCGCAGACGGTCTATTGGCAGGCGGTGGACGGGGGGAGCACAGAAGCCGCCTTC
GCGCATCAGGCCGATATGGTGATGCTGACGGCCAGACGGCAGGATGCGGCGGCGTTTAACGCGGCCTACCGGCGTTATCT
GCAACAGGTGCGCGGTGTGGCGGCCGATCAGGTTTGGTTTGCGGGTCAGATGATTATGGTGGAAGAAAACCATTATCCGC
TCGGAGTGTTTAACGGCGACATCGGCTTGGTACTGCCCGACGCGCAGGGACAATTGGCGGCTTATTTCCCGTCGGCGCAG
GGGCTGCGCATGCTCGCGCTCAGCCGTCTGCCGGCCTGCGGCGATGCGTTTGCGCTGACGGTGCATAAAAGTCAGGGTTC
GGAATACCGCGAAGTGTGGCTGTATGCGCCCGATGCCGTTTCAGACGGCCTCACGCGCGCGCTGCTGTATACGGCGGTTA
CGCGTGCGCGCGAACGTTTCCGCTTTATCGGCGGCGAAAGCGTATTCCGCCGCGCCTGCCTGCACAATGAAACACGGCGC
ACCGCCTTGCGCGCGCTGTTGGCCAAACTCAGCGCAGAACAAAATACCACAGCGCGGCCAAACCCGCCGCCGCCAGCAGA
TTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(496-539)

AAA domain (AAA_19)

(127-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

55.282

96.763

0.535