Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8922_RS05850 Genome accession   NZ_AP028390
Coordinates   1127290..1127844 (+) Length   184 a.a.
NCBI ID   WP_002882609.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11411     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1122290..1132844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8922_RS05820 (B11411_11600) rseP 1122598..1123704 (+) 1107 WP_070265004.1 RIP metalloprotease RseP -
  R8922_RS05825 (B11411_11610) - 1123697..1124557 (+) 861 WP_070265002.1 VirK family antimicrobial peptide resistance protein -
  R8922_RS05830 (B11411_11620) - 1124573..1124974 (-) 402 WP_172669976.1 hypothetical protein -
  R8922_RS05835 (B11411_11630) - 1125001..1125549 (-) 549 WP_172669975.1 sugar phosphate isomerase/epimerase family protein -
  R8922_RS05840 - 1125546..1126650 (-) 1105 Protein_1131 MFS transporter -
  R8922_RS05845 (B11411_11670) rpsF 1126904..1127281 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R8922_RS05850 (B11411_11680) ssb 1127290..1127844 (+) 555 WP_002882609.1 single-stranded DNA-binding protein Machinery gene
  R8922_RS05855 (B11411_11690) rpsR 1127855..1128115 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8922_RS05860 (B11411_11700) lon 1128176..1130551 (-) 2376 WP_107701907.1 endopeptidase La -
  R8922_RS05865 (B11411_11710) bamD 1130568..1131215 (-) 648 WP_052802090.1 outer membrane protein assembly factor BamD -
  R8922_RS05870 (B11411_11720) fliW 1131376..1131765 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8922_RS05875 (B11411_11730) proC 1131765..1132496 (+) 732 WP_070296720.1 pyrroline-5-carboxylate reductase Machinery gene
  R8922_RS05880 (B11411_11740) ctsT 1132493..1132795 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20824.71 Da        Isoelectric Point: 5.0431

>NTDB_id=94325 R8922_RS05850 WP_002882609.1 1127290..1127844(+) (ssb) [Campylobacter jejuni strain BCH-11411]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWNDQNGQNRSKHSIQVENMEMLGGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQN
PQHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=94325 R8922_RS05850 WP_002882609.1 1127290..1127844(+) (ssb) [Campylobacter jejuni strain BCH-11411]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAATGATCAAAATGGACAAAATCGCTCTAAGCATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCGGCAA
TTCCAATGCTCCACAACAAGGTGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATC
AAAGCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAAC
CCACAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.83

100

0.397

Multiple sequence alignment