Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACFIOB_RS03700 Genome accession   NZ_CP170401
Coordinates   772027..773109 (+) Length   360 a.a.
NCBI ID   WP_001622509.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t10543     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 767027..778109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOB_RS03680 gdpS 767396..768466 (-) 1071 WP_000460988.1 GGDEF domain-containing protein GdpS -
  ACFIOB_RS03685 - 768784..769839 (+) 1056 WP_410540282.1 glycosyltransferase family 4 protein -
  ACFIOB_RS03690 - 770011..770652 (-) 642 WP_000192949.1 YigZ family protein -
  ACFIOB_RS03695 fakB1 770796..771662 (+) 867 WP_000686346.1 fatty acid kinase binding subunit FakB1 -
  ACFIOB_RS03700 comFA 772027..773109 (+) 1083 WP_001622509.1 DEAD/DEAH box helicase Machinery gene
  ACFIOB_RS03705 - 773102..773776 (+) 675 WP_001057970.1 ComF family protein -
  ACFIOB_RS03710 hpf 773837..774409 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACFIOB_RS03715 secA 774824..777355 (+) 2532 WP_000506533.1 preprotein translocase subunit SecA -
  ACFIOB_RS03720 - 777397..777490 (+) 94 Protein_720 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41991.47 Da        Isoelectric Point: 9.5935

>NTDB_id=943152 ACFIOB_RS03700 WP_001622509.1 772027..773109(+) (comFA) [Staphylococcus aureus strain t10543]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSTK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPIPKYRYFKLNNNKIQKMLYRILQDQISNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMILAKKEIQNMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=943152 ACFIOB_RS03700 WP_001622509.1 772027..773109(+) (comFA) [Staphylococcus aureus strain t10543]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACACATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTAAAGTCATCTACTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAATTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAGTAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACGTTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCCACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCTAGCTAAAAAAGAGATTCAAAA
TATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367