Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACFION_RS10470 Genome accession   NZ_CP170399
Coordinates   2064633..2065715 (-) Length   360 a.a.
NCBI ID   WP_228567615.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t127     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2059633..2070715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFION_RS10450 - 2060242..2060346 (-) 105 WP_001790092.1 hypothetical protein -
  ACFION_RS10455 secA 2060388..2062919 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  ACFION_RS10460 hpf 2063333..2063905 (-) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACFION_RS10465 - 2063966..2064640 (-) 675 WP_001057965.1 ComF family protein -
  ACFION_RS10470 comFA 2064633..2065715 (-) 1083 WP_228567615.1 DEAD/DEAH box helicase Machinery gene
  ACFION_RS10475 fakB1 2066079..2066945 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  ACFION_RS10480 - 2067089..2067730 (+) 642 WP_000192949.1 YigZ family protein -
  ACFION_RS10485 - 2067902..2068957 (-) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  ACFION_RS10490 gdpS 2069275..2070345 (+) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42127.61 Da        Isoelectric Point: 9.7626

>NTDB_id=943121 ACFION_RS10470 WP_228567615.1 2064633..2065715(-) (comFA) [Staphylococcus aureus strain t127]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDTHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=943121 ACFION_RS10470 WP_228567615.1 2064633..2065715(-) (comFA) [Staphylococcus aureus strain t127]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAAAGAGACAAACGATTTTGTTATATGCCGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGAATACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGACAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAATCTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACAATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGTTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATACCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATACGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATACACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAG
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367