Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ACFIOF_RS07785 Genome accession   NZ_CP170397
Coordinates   1522081..1523232 (-) Length   383 a.a.
NCBI ID   WP_000020363.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t3841     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1517081..1528232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOF_RS07765 - 1517477..1518274 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  ACFIOF_RS07770 - 1518448..1518663 (+) 216 WP_000026308.1 hypothetical protein -
  ACFIOF_RS07775 rny 1518960..1520519 (-) 1560 WP_001050913.1 ribonuclease Y -
  ACFIOF_RS07780 recA 1520873..1521916 (-) 1044 WP_000368166.1 recombinase RecA Machinery gene
  ACFIOF_RS07785 cinA 1522081..1523232 (-) 1152 WP_000020363.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ACFIOF_RS07790 pgsA 1523457..1524035 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACFIOF_RS07795 - 1524069..1524461 (-) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  ACFIOF_RS07800 - 1524480..1525307 (-) 828 WP_000214890.1 YmfK family protein -
  ACFIOF_RS07805 ymfI 1525412..1526116 (-) 705 WP_000646236.1 elongation factor P 5-aminopentanone reductase -
  ACFIOF_RS07810 yfmH 1526116..1527402 (-) 1287 WP_000664779.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43233.53 Da        Isoelectric Point: 6.1914

>NTDB_id=943008 ACFIOF_RS07785 WP_000020363.1 1522081..1523232(-) (cinA) [Staphylococcus aureus strain t3841]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENLVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=943008 ACFIOF_RS07785 WP_000020363.1 1522081..1523232(-) (cinA) [Staphylococcus aureus strain t3841]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACCTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431