Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V8Z66_RS19965 Genome accession   NZ_CP146499
Coordinates   3811375..3811815 (+) Length   146 a.a.
NCBI ID   WP_338704983.1    Uniprot ID   -
Organism   Priestia aryabhattai strain HJ.T3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3806375..3816815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8Z66_RS19945 (V8Z66_19945) - 3806779..3807450 (-) 672 WP_028414985.1 response regulator transcription factor -
  V8Z66_RS19950 (V8Z66_19950) - 3807776..3808594 (+) 819 WP_033579942.1 phytoene/squalene synthase family protein -
  V8Z66_RS19955 (V8Z66_19955) - 3808630..3810579 (-) 1950 WP_047750005.1 FUSC family protein -
  V8Z66_RS19960 (V8Z66_19960) - 3810736..3810996 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  V8Z66_RS19965 (V8Z66_19965) nucA/comI 3811375..3811815 (+) 441 WP_338704983.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V8Z66_RS19970 (V8Z66_19970) comJ 3811851..3812258 (+) 408 WP_033579939.1 competence protein ComJ -
  V8Z66_RS19975 (V8Z66_19975) - 3812360..3812950 (-) 591 WP_221832133.1 CPBP family intramembrane glutamic endopeptidase -
  V8Z66_RS19980 (V8Z66_19980) helD 3813335..3815653 (-) 2319 WP_221832131.1 RNA polymerase recycling motor HelD -
  V8Z66_RS19985 (V8Z66_19985) - 3815897..3816022 (-) 126 WP_016765178.1 hypothetical protein -
  V8Z66_RS19990 (V8Z66_19990) - 3816162..3816677 (-) 516 WP_221832129.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16132.96 Da        Isoelectric Point: 4.3786

>NTDB_id=942901 V8Z66_RS19965 WP_338704983.1 3811375..3811815(+) (nucA/comI) [Priestia aryabhattai strain HJ.T3]
MSTYGEKLMASLFIIIACVLGFIGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEAN
REESLKGYPTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRRAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 441 bp        

>NTDB_id=942901 V8Z66_RS19965 WP_338704983.1 3811375..3811815(+) (nucA/comI) [Priestia aryabhattai strain HJ.T3]
ATGAGTACATACGGGGAAAAATTAATGGCAAGTCTATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCAGC
GTTTTTAGCTCCTGAAAAAACGGAAGCCGAAGTAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAA
CGGGTGATCATATTCGCGACGCGATTGCCGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGACGGTGCTGAAGCGAAT
CGGGAAGAATCGCTGAAAGGATACCCAACAAAAACAGGATATGACCGCGATGAATGGCCAATGGCTATGTGCGAAGAAGG
CGGAGCGGGAGCTGATATTCGCTATATTTCACCTTCTGATAACCGCAGAGCGGGCTCATGGGTTGGAAATCAATTAGAAC
AATACCCAGATGGTACACGCGTACAATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.286

86.301

0.555