Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V8Z66_RS16960 Genome accession   NZ_CP146499
Coordinates   3287980..3288402 (+) Length   140 a.a.
NCBI ID   WP_048019608.1    Uniprot ID   -
Organism   Priestia aryabhattai strain HJ.T3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3282980..3293402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8Z66_RS16935 (V8Z66_16935) - 3283332..3284165 (-) 834 WP_048018915.1 AraC family transcriptional regulator -
  V8Z66_RS16940 (V8Z66_16940) - 3284368..3285189 (+) 822 WP_028414492.1 histidine kinase -
  V8Z66_RS16945 (V8Z66_16945) - 3285190..3285831 (+) 642 WP_033580507.1 response regulator transcription factor -
  V8Z66_RS16950 (V8Z66_16950) - 3285966..3287345 (+) 1380 WP_048018914.1 PepSY domain-containing protein -
  V8Z66_RS16955 (V8Z66_16955) - 3287375..3287839 (+) 465 WP_221832550.1 FixH family protein -
  V8Z66_RS16960 (V8Z66_16960) nucA/comI 3287980..3288402 (+) 423 WP_048019608.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V8Z66_RS16965 (V8Z66_16965) - 3288557..3288910 (+) 354 WP_223272376.1 DUF1516 family protein -
  V8Z66_RS16970 (V8Z66_16970) - 3288950..3289543 (-) 594 WP_028414498.1 hypothetical protein -
  V8Z66_RS16975 (V8Z66_16975) - 3289696..3290352 (-) 657 WP_328170814.1 TetR/AcrR family transcriptional regulator -
  V8Z66_RS16980 (V8Z66_16980) - 3290375..3291652 (-) 1278 WP_048019607.1 glycosyltransferase -
  V8Z66_RS16985 (V8Z66_16985) - 3291952..3292497 (+) 546 WP_048019606.1 GNAT family N-acetyltransferase -
  V8Z66_RS16990 (V8Z66_16990) - 3292628..3293113 (-) 486 WP_033580500.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15256.08 Da        Isoelectric Point: 4.4082

>NTDB_id=942894 V8Z66_RS16960 WP_048019608.1 3287980..3288402(+) (nucA/comI) [Priestia aryabhattai strain HJ.T3]
MKKIVSGILILVIAVIVMIEGNPLEQNSSTNPSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRSESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=942894 V8Z66_RS16960 WP_048019608.1 3287980..3288402(+) (nucA/comI) [Priestia aryabhattai strain HJ.T3]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTGATAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATCCCTCCTACGATGAAGTCATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGATCGAGACGGTGCTGAAGAAAACCGCAGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGATCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGCGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATTTCACATCAAGTAGATGAGTTTCCAGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507