Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | V8V48_RS06890 | Genome accession | NZ_CP146481 |
| Coordinates | 1420691..1421665 (+) | Length | 324 a.a. |
| NCBI ID | WP_029377190.1 | Uniprot ID | - |
| Organism | Staphylococcus xylosus strain MS1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1415691..1426665
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V8V48_RS06855 (V8V48_06850) | rpmG | 1415804..1415953 (+) | 150 | WP_002483181.1 | 50S ribosomal protein L33 | - |
| V8V48_RS06860 (V8V48_06855) | - | 1416084..1416626 (+) | 543 | WP_029377184.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| V8V48_RS06865 (V8V48_06860) | - | 1416638..1418095 (+) | 1458 | WP_412486905.1 | rhomboid family intramembrane serine protease | - |
| V8V48_RS06870 (V8V48_06865) | - | 1418079..1418276 (+) | 198 | WP_029377186.1 | YqgQ family protein | - |
| V8V48_RS06875 (V8V48_06870) | - | 1418658..1419644 (+) | 987 | WP_029377187.1 | glucokinase | - |
| V8V48_RS06880 (V8V48_06875) | - | 1419644..1419967 (+) | 324 | WP_029377188.1 | MTH1187 family thiamine-binding protein | - |
| V8V48_RS06885 (V8V48_06880) | - | 1419969..1420592 (+) | 624 | WP_029377189.1 | MBL fold metallo-hydrolase | - |
| V8V48_RS06890 (V8V48_06885) | comGA | 1420691..1421665 (+) | 975 | WP_029377190.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| V8V48_RS06895 (V8V48_06890) | comGB | 1421637..1422704 (+) | 1068 | WP_051664335.1 | competence type IV pilus assembly protein ComGB | - |
| V8V48_RS06900 (V8V48_06895) | comGC | 1422724..1423041 (+) | 318 | WP_029377192.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| V8V48_RS06905 (V8V48_06900) | comGD | 1423016..1423465 (+) | 450 | WP_257470552.1 | competence type IV pilus minor pilin ComGD | - |
| V8V48_RS06910 (V8V48_06905) | - | 1423452..1423751 (+) | 300 | WP_029377194.1 | hypothetical protein | - |
| V8V48_RS06915 (V8V48_06910) | comGF | 1423723..1424166 (+) | 444 | WP_029377195.1 | competence type IV pilus minor pilin ComGF | - |
| V8V48_RS06920 (V8V48_06915) | - | 1424346..1424846 (+) | 501 | WP_037557022.1 | shikimate kinase | - |
| V8V48_RS06925 (V8V48_06920) | gcvT | 1425033..1426124 (+) | 1092 | WP_029377198.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37138.33 Da Isoelectric Point: 9.3719
>NTDB_id=942848 V8V48_RS06890 WP_029377190.1 1420691..1421665(+) (comGA) [Staphylococcus xylosus strain MS1]
MKLLFNSMIEKAISNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSITSILNQRLITNVKGERELVYEQITKEDVYHFFKNSYTLPKEFHNLSYKLNKMSKEGMICETSM
ERYL
MKLLFNSMIEKAISNDASDIHFIPADKEVMIKFRIRDDLKSIETLQLNTYLKLLTYMKYQAGLDVSKHNAAQSGRYIYKL
KQIYFLRISTLPLSLGNESCVIRIIPQYFQKHKNNQNITHLYNLMNKKQGLILLSGPTGSGKSTLMYHMLSYAKENLNLN
IITIEEPVEQLINGITQISLNEKAGINYETSFKAILRCDPDIILIGEIRDANVAKHVIQASLSGHLVLSTIHASNCKGVI
LRLLEMGITVQQLIQSITSILNQRLITNVKGERELVYEQITKEDVYHFFKNSYTLPKEFHNLSYKLNKMSKEGMICETSM
ERYL
Nucleotide
Download Length: 975 bp
>NTDB_id=942848 V8V48_RS06890 WP_029377190.1 1420691..1421665(+) (comGA) [Staphylococcus xylosus strain MS1]
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAGTAATGATGCATCAGATATTCATTTTATCCCCGCTGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACATAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCACTAGGAAATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TAAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAAGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAACCCGTTGAACAATTAATAAATGGCATAACTCAAATATCTTTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCAGATATTATCTTGATCGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTCATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGAGTTATT
TTAAGACTGCTAGAAATGGGGATAACGGTTCAACAACTCATACAATCAATCACTAGCATATTAAATCAAAGGCTTATTAC
TAACGTAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAACTAAAGAAGATGTTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGAATTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA
TTGAAGCTATTGTTTAATAGTATGATTGAAAAGGCAATTAGTAATGATGCATCAGATATTCATTTTATCCCCGCTGATAA
AGAAGTAATGATTAAATTTAGAATACGTGATGATTTGAAGTCTATAGAAACATTGCAATTAAATACGTATTTAAAATTAT
TAACCTATATGAAATACCAAGCTGGATTAGATGTCTCTAAACATAATGCTGCACAGAGTGGTAGATATATTTATAAATTA
AAACAAATTTACTTCCTTAGAATATCAACGCTTCCTTTATCACTAGGAAATGAAAGCTGTGTTATTAGGATTATTCCGCA
ATATTTTCAAAAGCATAAAAATAATCAGAACATAACGCATTTATATAATCTAATGAATAAAAAACAAGGATTAATTTTAT
TAAGTGGACCTACTGGCTCTGGAAAAAGTACGTTAATGTATCACATGTTATCTTATGCTAAAGAGAACTTAAATTTAAAT
ATAATTACAATTGAAGAACCCGTTGAACAATTAATAAATGGCATAACTCAAATATCTTTAAATGAAAAGGCAGGGATAAA
TTATGAAACTTCTTTTAAAGCTATTTTACGCTGCGATCCAGATATTATCTTGATCGGAGAAATAAGAGATGCAAACGTAG
CTAAACATGTCATACAAGCCAGTTTAAGTGGTCATTTAGTACTTTCGACAATTCATGCTAGTAATTGCAAAGGAGTTATT
TTAAGACTGCTAGAAATGGGGATAACGGTTCAACAACTCATACAATCAATCACTAGCATATTAAATCAAAGGCTTATTAC
TAACGTAAAAGGTGAAAGAGAGCTTGTATATGAACAGATAACTAAAGAAGATGTTTATCACTTCTTTAAAAATAGCTATA
CATTACCCAAAGAATTTCATAACTTATCTTATAAACTAAATAAAATGTCAAAAGAGGGGATGATATGTGAAACATCAATG
GAACGTTATCTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
62.654 |
100 |
0.627 |
| comGA | Staphylococcus aureus N315 |
62.654 |
100 |
0.627 |