Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V8U24_RS05115 Genome accession   NZ_CP146380
Coordinates   956395..957024 (-) Length   209 a.a.
NCBI ID   WP_016261884.1    Uniprot ID   A0A370V9P5
Organism   Escherichia marmotae strain CNCTC 8131     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 951395..962024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8U24_RS05100 (V8U24_05100) helD 951681..953691 (-) 2011 Protein_1007 DNA helicase IV -
  V8U24_RS05105 (V8U24_05105) - 953814..954260 (+) 447 WP_001261229.1 YccF domain-containing protein -
  V8U24_RS05110 (V8U24_05110) yccS 954270..956432 (+) 2163 WP_072274944.1 YccS family putative transporter -
  V8U24_RS05115 (V8U24_05115) sxy/tfoX 956395..957024 (-) 630 WP_016261884.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V8U24_RS05120 (V8U24_05120) sulA 957242..957751 (+) 510 WP_000288698.1 SOS-induced cell division inhibitor SulA -
  V8U24_RS05125 (V8U24_05125) ompA 958107..959033 (+) 927 Protein_1012 porin OmpA -
  V8U24_RS05130 (V8U24_05130) matP 959129..959581 (-) 453 WP_001516131.1 macrodomain Ter protein MatP -
  V8U24_RS05135 (V8U24_05135) - 959769..961529 (+) 1761 WP_000156540.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24216.19 Da        Isoelectric Point: 9.5571

>NTDB_id=942808 V8U24_RS05115 WP_016261884.1 956395..957024(-) (sxy/tfoX) [Escherichia marmotae strain CNCTC 8131]
MKSLSYKRIYKSQKYLATLGTIEYRSLFGSYSLTVDDTVFAVVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRFVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKTTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSITPKQEFPVELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=942808 V8U24_RS05115 WP_016261884.1 956395..957024(-) (sxy/tfoX) [Escherichia marmotae strain CNCTC 8131]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAGAAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGTCTGACCGTTGACGACACGGTATTTGCGGTAGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGCGCACAATACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGTGGACGGTTCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTTTATGGCGAAATCAACTGAAGCTGGTACGTCTGTCAAAATATTCTCTCGACGCAGCGCT
TAAAGAGAAAACTACACGTAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAAGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCGAAAATGTGTTGGTTGCGGCTGCGGCAGCAAAAT
AGTCTGGTGACAGAAAAGATCTTGTTTATGCTTGAAGGCGCAATTATCGGTATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGATTCTATTACGCCAAAGCAGGAGTTTCCTGTGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V9P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

97.129

100

0.971