Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   V6986_RS11520 Genome accession   NZ_CP146358
Coordinates   2289622..2290392 (-) Length   256 a.a.
NCBI ID   WP_059374606.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2284622..2295392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS11500 (V6986_11500) - 2284714..2285535 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  V6986_RS11505 (V6986_11505) - 2285561..2286199 (-) 639 WP_039180035.1 helix-turn-helix transcriptional regulator -
  V6986_RS11510 (V6986_11510) glyS 2286367..2288412 (-) 2046 WP_059374611.1 glycine--tRNA ligase subunit beta -
  V6986_RS11515 (V6986_11515) glyQ 2288405..2289292 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  V6986_RS11520 (V6986_11520) recO 2289622..2290392 (-) 771 WP_059374606.1 DNA repair protein RecO Machinery gene
  V6986_RS11525 (V6986_11525) - 2290428..2290571 (-) 144 WP_003217288.1 YqzL family protein -
  V6986_RS11530 (V6986_11530) era 2290720..2291625 (-) 906 WP_007501305.1 GTPase Era -
  V6986_RS11535 (V6986_11535) - 2291618..2292016 (-) 399 WP_008356263.1 cytidine deaminase -
  V6986_RS11540 (V6986_11540) - 2292130..2292516 (-) 387 WP_024423020.1 diacylglycerol kinase family protein -
  V6986_RS11545 (V6986_11545) ybeY 2292494..2292973 (-) 480 WP_024423021.1 rRNA maturation RNase YbeY -
  V6986_RS11550 (V6986_11550) - 2292974..2295061 (-) 2088 WP_186315114.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29286.92 Da        Isoelectric Point: 8.1211

>NTDB_id=942745 V6986_RS11520 WP_059374606.1 2289622..2290392(-) (recO) [Bacillus safensis strain yw6]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELIDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYRLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=942745 V6986_RS11520 WP_059374606.1 2289622..2290392(-) (recO) [Bacillus safensis strain yw6]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGCGTGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGTCAGCCGTTTT
TATACGGCACCTTTCTTATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACGGAATTGATTGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAGACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAGCCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758