Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   V6986_RS11185 Genome accession   NZ_CP146358
Coordinates   2233898..2234233 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2228898..2239233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS11165 (V6986_11165) gcvT 2229386..2230483 (-) 1098 WP_338591686.1 glycine cleavage system aminomethyltransferase GcvT -
  V6986_RS11170 (V6986_11170) - 2231035..2232705 (+) 1671 WP_058839090.1 SNF2-related protein -
  V6986_RS11175 (V6986_11175) - 2232720..2233517 (+) 798 WP_039179926.1 YqhG family protein -
  V6986_RS11180 (V6986_11180) - 2233700..2233864 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  V6986_RS11185 (V6986_11185) sinR 2233898..2234233 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  V6986_RS11190 (V6986_11190) - 2234301..2235101 (-) 801 WP_039179929.1 TasA family protein -
  V6986_RS11195 (V6986_11195) - 2235159..2235731 (-) 573 WP_047202287.1 signal peptidase I -
  V6986_RS11200 (V6986_11200) tapA 2235783..2236310 (-) 528 WP_151284417.1 amyloid fiber anchoring/assembly protein TapA -
  V6986_RS11205 (V6986_11205) - 2236610..2236888 (+) 279 WP_064497648.1 DUF3889 domain-containing protein -
  V6986_RS11210 (V6986_11210) - 2236922..2237116 (-) 195 WP_330545301.1 YqzE family protein -
  V6986_RS11215 (V6986_11215) comGG 2237176..2237559 (-) 384 WP_338591691.1 competence type IV pilus minor pilin ComGG -
  V6986_RS11220 (V6986_11220) comGF 2237556..2238086 (-) 531 WP_338591693.1 competence type IV pilus minor pilin ComGF -
  V6986_RS11225 (V6986_11225) comGE 2237995..2238312 (-) 318 WP_058839085.1 competence type IV pilus minor pilin ComGE -
  V6986_RS11230 (V6986_11230) comGD 2238296..2238742 (-) 447 WP_058839084.1 competence type IV pilus minor pilin ComGD -
  V6986_RS11235 (V6986_11235) comGC 2238735..2239028 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=942742 V6986_RS11185 WP_024422969.1 2233898..2234233(+) (sinR) [Bacillus safensis strain yw6]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=942742 V6986_RS11185 WP_024422969.1 2233898..2234233(+) (sinR) [Bacillus safensis strain yw6]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946