Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   V6986_RS10045 Genome accession   NZ_CP146358
Coordinates   2028846..2029481 (+) Length   211 a.a.
NCBI ID   WP_338595111.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2023846..2034481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS10005 (V6986_10005) - 2024005..2025123 (+) 1119 WP_338591404.1 NADH-dependent flavin oxidoreductase -
  V6986_RS10010 (V6986_10010) - 2025177..2025683 (-) 507 WP_039183169.1 PTS glucose transporter subunit IIA -
  V6986_RS10015 (V6986_10015) - 2025853..2026272 (+) 420 WP_059377733.1 Hsp20/alpha crystallin family protein -
  V6986_RS10020 (V6986_10020) - 2026293..2026745 (-) 453 WP_338591409.1 YppG family protein -
  V6986_RS10025 (V6986_10025) - 2026854..2027234 (-) 381 WP_228280239.1 YppE family protein -
  V6986_RS10030 (V6986_10030) - 2027284..2027520 (-) 237 WP_039179468.1 DUF5446 family protein -
  V6986_RS10035 (V6986_10035) sspM 2027715..2027819 (+) 105 WP_039179471.1 acid-soluble spore protein SspM -
  V6986_RS10040 (V6986_10040) - 2027843..2028799 (-) 957 WP_338591414.1 DUF2515 domain-containing protein -
  V6986_RS10045 (V6986_10045) recU 2028846..2029481 (+) 636 WP_338595111.1 Holliday junction resolvase RecU Machinery gene
  V6986_RS10050 (V6986_10050) - 2029501..2032212 (+) 2712 WP_338591416.1 PBP1A family penicillin-binding protein -
  V6986_RS10055 (V6986_10055) - 2032248..2032757 (-) 510 WP_330545245.1 YpoC family protein -
  V6986_RS10060 (V6986_10060) nth 2032754..2033416 (-) 663 WP_330545246.1 endonuclease III -
  V6986_RS10065 (V6986_10065) - 2033434..2034138 (-) 705 WP_338591423.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24317.70 Da        Isoelectric Point: 9.7504

>NTDB_id=942739 V6986_RS10045 WP_338595111.1 2028846..2029481(+) (recU) [Bacillus safensis strain yw6]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMMLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSSTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
QNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQVRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=942739 V6986_RS10045 WP_338595111.1 2028846..2029481(+) (recU) [Bacillus safensis strain yw6]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGATGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTATAACGGGGTGTACAAAGGCCGCTATATTGATTTTGAAGCAAAGGAAACCAAAAG
TTCTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAG
CAAAACGGCCGTAAATCCATTAGCAAAGACGAACTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAAGTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

95.735

0.692