Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V6986_RS08665 Genome accession   NZ_CP146358
Coordinates   1758875..1759255 (+) Length   126 a.a.
NCBI ID   WP_228280000.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1753875..1764255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS08655 (V6986_08655) - 1754369..1757512 (+) 3144 WP_338594994.1 cytochrome P450 -
  V6986_RS08660 (V6986_08660) - 1757707..1758615 (+) 909 WP_099663299.1 trypsin-like serine protease -
  V6986_RS08665 (V6986_08665) nucA/comI 1758875..1759255 (+) 381 WP_228280000.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V6986_RS08670 (V6986_08670) - 1759403..1760251 (+) 849 WP_039178899.1 STAS domain-containing protein -
  V6986_RS08675 (V6986_08675) - 1760284..1760826 (-) 543 WP_039178902.1 IseA DL-endopeptidase inhibitor family protein -
  V6986_RS08680 (V6986_08680) - 1761123..1761572 (+) 450 WP_059375407.1 hypothetical protein -
  V6986_RS08685 (V6986_08685) lexA 1761618..1762238 (-) 621 WP_024425129.1 transcriptional repressor LexA -
  V6986_RS08690 (V6986_08690) yneA 1762398..1762709 (+) 312 WP_034283425.1 cell division suppressor protein YneA -
  V6986_RS08695 (V6986_08695) - 1762727..1763374 (+) 648 WP_338594995.1 recombinase family protein -
  V6986_RS08700 (V6986_08700) - 1763444..1763674 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13757.50 Da        Isoelectric Point: 8.5068

>NTDB_id=942738 V6986_RS08665 WP_228280000.1 1758875..1759255(+) (nucA/comI) [Bacillus safensis strain yw6]
MGMLLGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=942738 V6986_RS08665 WP_228280000.1 1758875..1759255(+) (nucA/comI) [Bacillus safensis strain yw6]
ATGGGCATGTTGTTAGGTGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACA
GGAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGATTTGACCGGGATGAATGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGTGTTCAATATGTCAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGGCACCAAATCAGCGGATTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.349

100

0.563