Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V6986_RS07860 Genome accession   NZ_CP146358
Coordinates   1588710..1589612 (+) Length   300 a.a.
NCBI ID   WP_338594891.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1583710..1594612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS07840 (V6986_07840) - 1584373..1586112 (+) 1740 WP_338594889.1 glycosyltransferase -
  V6986_RS07845 (V6986_07845) - 1586109..1586384 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  V6986_RS07850 (V6986_07850) sucC 1586561..1587721 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  V6986_RS07855 (V6986_07855) sucD 1587744..1588646 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  V6986_RS07860 (V6986_07860) dprA 1588710..1589612 (+) 903 WP_338594891.1 DNA-processing protein DprA Machinery gene
  V6986_RS07865 (V6986_07865) topA 1589806..1591881 (+) 2076 WP_058837708.1 type I DNA topoisomerase -
  V6986_RS07870 (V6986_07870) trmFO 1591952..1593256 (+) 1305 WP_034317774.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V6986_RS07875 (V6986_07875) xerC 1593319..1594236 (+) 918 WP_212042671.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34238.72 Da        Isoelectric Point: 9.3052

>NTDB_id=942734 V6986_RS07860 WP_338594891.1 1588710..1589612(+) (dprA) [Bacillus safensis strain yw6]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKRLGVVGTRLPSSYGEACVKKIVGELVKEEWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHVQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTRGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILDEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=942734 V6986_RS07860 WP_338594891.1 1588710..1589612(+) (dprA) [Bacillus safensis strain yw6]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTACTTACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCTATCACATCACCCTTATATCCAAGCACACTAAAAAATATCTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGATTAGGTGTAGTCGGCACGCGACTTCCATCGTCTTATGGAGAAGCATGTGTGA
AAAAAATTGTTGGTGAGCTTGTCAAAGAAGAGTGGATGATTGTTAGTGGGCTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGGAAAACGATCGGCATTATAGCCGGTGGCTTTCAGCATTTATATCCAAAAGAGCATGT
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCGCCTTATGTCAAACCAGAAAAATGGCATT
TCCCAATGAGAAATCGTTTAATTAGTGCGTTGACGAGAGGAACCATTGTGATTCAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAAGTATTTGCGGTTGCCGGATCCATCTTTGATCCTAATTCTACAGG
GCCGGCAAGACTCATTCAGCAGGGGGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGATGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

38.462

99.667

0.383