Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V6986_RS07015 Genome accession   NZ_CP146358
Coordinates   1422320..1422598 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus safensis strain yw6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1417320..1427598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS06995 (V6986_06995) - 1417642..1419261 (+) 1620 WP_041084974.1 ATP-binding cassette domain-containing protein -
  V6986_RS07000 (V6986_07000) - 1419490..1420722 (-) 1233 WP_338594787.1 aminopeptidase -
  V6986_RS07005 (V6986_07005) - 1420830..1420961 (-) 132 WP_003210922.1 protein YkpC -
  V6986_RS07010 (V6986_07010) mreBH 1421036..1422043 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  V6986_RS07015 (V6986_07015) abrB 1422320..1422598 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  V6986_RS07020 (V6986_07020) - 1422743..1424053 (+) 1311 WP_338594790.1 ATP-binding protein -
  V6986_RS07025 (V6986_07025) - 1424058..1424894 (+) 837 WP_338594792.1 gamma-glutamylcyclotransferase -
  V6986_RS07030 (V6986_07030) - 1424932..1425600 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -
  V6986_RS07035 (V6986_07035) ade 1425862..1427592 (+) 1731 WP_338594795.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=942733 V6986_RS07015 WP_017359400.1 1422320..1422598(+) (abrB) [Bacillus safensis strain yw6]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=942733 V6986_RS07015 WP_017359400.1 1422320..1422598(+) (abrB) [Bacillus safensis strain yw6]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGTGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATACGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543