Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   V6986_RS06905 Genome accession   NZ_CP146358
Coordinates   1402179..1402751 (+) Length   190 a.a.
NCBI ID   WP_024426871.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1397179..1407751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS06875 (V6986_06875) dapD 1397306..1398016 (+) 711 WP_060699234.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  V6986_RS06880 (V6986_06880) - 1398050..1399228 (+) 1179 WP_058837779.1 N-acetyldiaminopimelate deacetylase -
  V6986_RS06885 (V6986_06885) - 1399279..1399521 (+) 243 WP_024424725.1 YkuS family protein -
  V6986_RS06890 (V6986_06890) - 1399544..1400353 (-) 810 WP_024424726.1 mechanosensitive ion channel family protein -
  V6986_RS06895 (V6986_06895) ahpA 1400625..1401167 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  V6986_RS06900 (V6986_06900) - 1401250..1401708 (+) 459 WP_024424727.1 TlpA disulfide reductase family protein -
  V6986_RS06905 (V6986_06905) rok 1402179..1402751 (+) 573 WP_024426871.1 transcriptional regulator Rok Regulator
  V6986_RS06910 (V6986_06910) - 1402795..1403712 (-) 918 WP_126681758.1 sigmaE regulated sporulation protein -
  V6986_RS06915 (V6986_06915) - 1403797..1404378 (+) 582 WP_126681759.1 molybdenum cofactor guanylyltransferase -
  V6986_RS06920 (V6986_06920) - 1404410..1405426 (+) 1017 WP_126681760.1 thiazole biosynthesis adenylyltransferase ThiF -
  V6986_RS06925 (V6986_06925) glp 1405436..1406713 (+) 1278 WP_185847126.1 gephyrin-like molybdotransferase Glp -
  V6986_RS06930 (V6986_06930) mobB 1406695..1407219 (+) 525 WP_058837773.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  V6986_RS06935 (V6986_06935) - 1407216..1407707 (+) 492 WP_058837772.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21543.50 Da        Isoelectric Point: 9.7309

>NTDB_id=942732 V6986_RS06905 WP_024426871.1 1402179..1402751(+) (rok) [Bacillus safensis strain yw6]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQQ
PAQPQSSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTF
MQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 573 bp        

>NTDB_id=942732 V6986_RS06905 WP_024426871.1 1402179..1402751(+) (rok) [Bacillus safensis strain yw6]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAACGAGGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGCGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTACGTACAGAAAGAAAGACAGATTCACTGCCTGTATTAGCTGAGCTTGCTGCGCAAGAAATGAGAAGCTACCAGCAG
CCGGCACAACCACAATCATCATCTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGGATCGACAAG
ACGCAGAAGAGGCACAGCTCGTCCTGGCTCAAAGGCAGCGAAGCTTCGTGAAGCTGCGATTAAAACGTTAAAACGTCATA
ATGCAGCGATTAAAAGCTCAGAGCTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATCCCAAATATGACAACGTTT
ATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAGAAGCCTTATCGCGGACAGTATATTTTAGAAGGCGACATTCAAAC
AGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.283

98.421

0.8