Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   V6986_RS06780 Genome accession   NZ_CP146358
Coordinates   1382392..1382853 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1377392..1387853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS06760 (V6986_06760) - 1377515..1377872 (+) 358 Protein_1277 IS3 family transposase -
  V6986_RS06765 (V6986_06765) - 1378006..1378584 (-) 579 WP_144495045.1 hypothetical protein -
  V6986_RS06770 (V6986_06770) - 1380063..1381373 (+) 1311 WP_338594757.1 MFS transporter -
  V6986_RS06775 (V6986_06775) - 1381447..1382355 (+) 909 WP_024424709.1 chemotaxis protein -
  V6986_RS06780 (V6986_06780) kre 1382392..1382853 (-) 462 WP_008356877.1 YkyB family protein Regulator
  V6986_RS06785 (V6986_06785) - 1383088..1383264 (+) 177 WP_180272404.1 hypothetical protein -
  V6986_RS06790 (V6986_06790) - 1383357..1384274 (-) 918 WP_338594760.1 AraC family transcriptional regulator -
  V6986_RS06795 (V6986_06795) - 1384388..1385284 (+) 897 WP_064498385.1 EamA family transporter -
  V6986_RS06800 (V6986_06800) - 1385458..1385673 (-) 216 WP_039178134.1 hypothetical protein -
  V6986_RS06805 (V6986_06805) - 1385870..1387147 (-) 1278 WP_338594763.1 MFS transporter -
  V6986_RS06810 (V6986_06810) - 1387221..1387718 (-) 498 WP_039178139.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=942731 V6986_RS06780 WP_008356877.1 1382392..1382853(-) (kre) [Bacillus safensis strain yw6]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=942731 V6986_RS06780 WP_008356877.1 1382392..1382853(-) (kre) [Bacillus safensis strain yw6]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765