Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V6986_RS00255 Genome accession   NZ_CP146358
Coordinates   47255..47545 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42255..52545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS00215 (V6986_00215) - 42286..42615 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  V6986_RS00220 (V6986_00220) - 42628..43068 (+) 441 WP_039175878.1 YaaR family protein -
  V6986_RS00225 (V6986_00225) holB 43080..44069 (+) 990 WP_024427206.1 DNA polymerase III subunit delta' -
  V6986_RS00230 (V6986_00230) - 44072..44900 (+) 829 Protein_33 stage 0 sporulation family protein -
  V6986_RS00235 (V6986_00235) yabA 44915..45268 (+) 354 WP_039175883.1 DNA replication initiation control protein YabA -
  V6986_RS00240 (V6986_00240) - 45324..46067 (+) 744 WP_024427205.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V6986_RS00245 (V6986_00245) - 46054..46353 (+) 300 WP_059376749.1 GIY-YIG nuclease family protein -
  V6986_RS00250 (V6986_00250) rsmI 46328..47209 (+) 882 WP_338593780.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V6986_RS00255 (V6986_00255) abrB 47255..47545 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  V6986_RS00260 (V6986_00260) metG 48066..50066 (+) 2001 WP_039175894.1 methionine--tRNA ligase -
  V6986_RS00265 (V6986_00265) - 50148..50915 (+) 768 WP_039175897.1 TatD family hydrolase -
  V6986_RS00270 (V6986_00270) - 51160..52362 (+) 1203 WP_039175900.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=942711 V6986_RS00255 WP_087975202.1 47255..47545(-) (abrB) [Bacillus safensis strain yw6]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=942711 V6986_RS00255 WP_087975202.1 47255..47545(-) (abrB) [Bacillus safensis strain yw6]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATTGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938