Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   V6986_RS00020 Genome accession   NZ_CP146358
Coordinates   3057..4169 (+) Length   370 a.a.
NCBI ID   WP_024424075.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS00005 (V6986_00005) dnaA 1..1341 (+) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  V6986_RS00010 (V6986_00010) dnaN 1538..2674 (+) 1137 WP_039175825.1 DNA polymerase III subunit beta -
  V6986_RS00015 (V6986_00015) yaaA 2825..3040 (+) 216 WP_008360916.1 S4 domain-containing protein YaaA -
  V6986_RS00020 (V6986_00020) recF 3057..4169 (+) 1113 WP_024424075.1 DNA replication/repair protein RecF Machinery gene
  V6986_RS00025 (V6986_00025) - 4187..4432 (+) 246 WP_039175827.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  V6986_RS00030 (V6986_00030) gyrB 4490..6406 (+) 1917 WP_338595144.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  V6986_RS00035 (V6986_00035) gyrA 6639..9143 (+) 2505 WP_039175829.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42573.66 Da        Isoelectric Point: 7.3663

>NTDB_id=942709 V6986_RS00020 WP_024424075.1 3057..4169(+) (recF) [Bacillus safensis strain yw6]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLREREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=942709 V6986_RS00020 WP_024424075.1 3057..4169(+) (recF) [Bacillus safensis strain yw6]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAATTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGTAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCTCTCAGCGT
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACTGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGAGAGAGAAATAGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTAAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCTATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAAGGACGTGTCCAGACCTTCGTCACCACAACAAGTGT
TGAAGGTATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.74

99.73

0.835