Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACFI6I_RS26210 Genome accession   NZ_CP170370
Coordinates   5677701..5678297 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PAO1_WT_HKU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5672701..5683297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFI6I_RS26190 (ACFI6I_26190) aroK 5673833..5674351 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACFI6I_RS26195 (ACFI6I_26195) pilQ 5674363..5676507 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  ACFI6I_RS26200 (ACFI6I_26200) pilP 5676561..5677084 (-) 524 Protein_5168 type 4a pilus biogenesis lipoprotein PilP -
  ACFI6I_RS26205 (ACFI6I_26205) pilO 5677081..5677704 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFI6I_RS26210 (ACFI6I_26210) pilN 5677701..5678297 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACFI6I_RS26215 (ACFI6I_26215) pilM 5678297..5679361 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACFI6I_RS26220 (ACFI6I_26220) - 5679546..5682014 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=942676 ACFI6I_RS26210 WP_003095839.1 5677701..5678297(-) (pilN) [Pseudomonas aeruginosa strain PAO1_WT_HKU]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=942676 ACFI6I_RS26210 WP_003095839.1 5677701..5678297(-) (pilN) [Pseudomonas aeruginosa strain PAO1_WT_HKU]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369