Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V6L79_RS09530 Genome accession   NZ_CP146347
Coordinates   2059383..2060018 (+) Length   211 a.a.
NCBI ID   WP_261742390.1    Uniprot ID   -
Organism   Pseudomonas sp. ML2-2023-6 strain L2-2023-6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2054383..2065018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6L79_RS09510 (V6L79_09510) - 2054617..2055549 (+) 933 WP_261741335.1 ABC transporter ATP-binding protein -
  V6L79_RS09515 (V6L79_09515) - 2055546..2056325 (+) 780 WP_261741336.1 ABC transporter permease -
  V6L79_RS09520 (V6L79_09520) - 2056465..2056980 (-) 516 WP_261741337.1 DUF2062 domain-containing protein -
  V6L79_RS09525 (V6L79_09525) - 2057114..2059334 (+) 2221 Protein_1855 DNA internalization-related competence protein ComEC/Rec2 -
  V6L79_RS09530 (V6L79_09530) exbB 2059383..2060018 (+) 636 WP_261742390.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6L79_RS09535 (V6L79_09535) - 2060015..2060443 (+) 429 WP_321835978.1 biopolymer transporter ExbD -
  V6L79_RS09540 (V6L79_09540) lpxK 2060443..2061447 (+) 1005 WP_321836649.1 tetraacyldisaccharide 4'-kinase -
  V6L79_RS09545 (V6L79_09545) - 2061478..2061663 (+) 186 WP_019827923.1 Trm112 family protein -
  V6L79_RS09550 (V6L79_09550) kdsB 2061660..2062424 (+) 765 WP_261741341.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6L79_RS09555 (V6L79_09555) murB 2062421..2063440 (+) 1020 WP_338580124.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.19 Da        Isoelectric Point: 6.8768

>NTDB_id=942668 V6L79_RS09530 WP_261742390.1 2059383..2060018(+) (exbB) [Pseudomonas sp. ML2-2023-6 strain L2-2023-6]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKLLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDREVDVVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=942668 V6L79_RS09530 WP_261742390.1 2059383..2060018(+) (exbB) [Pseudomonas sp. ML2-2023-6 strain L2-2023-6]
GTGTGGGAACTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTGACCCCGGAGCATCTGCTCGGCCAGGTCTGGGTCTGGATCAAAGACA
AACAGATGGACAAGGAAAAACTCAAATTACTGCGCGCCGACTCGCCTTTGGGTGAGATTCTGGCCGCGGGCCTGGCCAAC
TCAAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCCGCCCGGGTGATTCACGAGCTTGAGCGCTACCT
CAATGCGCTGGGTACGATTGCTGCGATGGCGCCGTTGCTGGGCCTGCTGGGCACCGTGTTGGGCATGATCGATATTTTCA
GCTCCTTCATGGGCTCGGGCATGACCACCAACGCCGCCGTGCTGGCGGGGGGTATTTCCAAGGCGCTGATTACTACTGCC
GCTGGTCTGATGGTGGGCATCCCCGCAGTCTTTTTCCATCGCTTCCTGCAACGTCGGGTTGACGAGTTGGTGGTCGGCAT
GGAGCAAGAAGCGATTAAGCTGGTCGAAGTGGTACAGGGCGACCGCGAAGTCGATGTGGTTGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853