Detailed information NTG0942649

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFI6I_RS18800
• Genome accession: NZ_CP170370
• Coordinates: 4057559..4058563 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PAO1_WT_HKU
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4052559..4063563

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFI6I_RS18785 (ACFI6I_18785)	-	4053042..4054049 (+)	1008	WP_003113874.1	TolB family protein	-
ACFI6I_RS18790 (ACFI6I_18790)	mutS	4054175..4056742 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACFI6I_RS18795 (ACFI6I_18795)	fdxA	4056809..4057132 (+)	324	WP_003092272.1	ferredoxin FdxA	-
ACFI6I_RS18800 (ACFI6I_18800)	rpoS	4057559..4058563 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACFI6I_RS18805 (ACFI6I_18805)	-	4058668..4059561 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACFI6I_RS18810 (ACFI6I_18810)	-	4059607..4060242 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACFI6I_RS18815 (ACFI6I_18815)	surE	4060275..4061024 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACFI6I_RS18820 (ACFI6I_18820)	truD	4061012..4062079 (-)	1068	WP_003113870.1	tRNA pseudouridine(13) synthase TruD	-
ACFI6I_RS18825 (ACFI6I_18825)	ispF	4062076..4062549 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFI6I_RS18830 (ACFI6I_18830)	fghA	4062620..4063471 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=942649 ACFI6I_RS18800 WP_003113871.1 4057559..4058563(-) (rpoS) [Pseudomonas aeruginosa strain PAO1_WT_HKU]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=942649 ACFI6I_RS18800 WP_003113871.1 4057559..4058563(-) (rpoS) [Pseudomonas aeruginosa strain PAO1_WT_HKU]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653