Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SOV_RS08970 Genome accession   NZ_CP146301
Coordinates   1811489..1812406 (+) Length   305 a.a.
NCBI ID   WP_021167520.1    Uniprot ID   A0A0U1KVF5
Organism   Sporomusa ovata DSM 2662     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1806489..1817406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOV_RS08960 (SOV_17740) - 1807516..1807776 (+) 261 WP_021167518.1 stage V sporulation protein S -
  SOV_RS08965 (SOV_17750) smc 1807902..1811459 (+) 3558 WP_021167519.1 chromosome segregation protein SMC -
  SOV_RS08970 (SOV_17760) pilA 1811489..1812406 (+) 918 WP_021167520.1 signal recognition particle-docking protein FtsY Machinery gene
  SOV_RS08975 (SOV_17770) ylxM 1812487..1812855 (+) 369 WP_021167521.1 YlxM family DNA-binding protein -
  SOV_RS08980 (SOV_17780) ffh 1812863..1814203 (+) 1341 WP_021167522.1 signal recognition particle protein -
  SOV_RS08985 (SOV_17790) rpsP 1814249..1814530 (+) 282 WP_021167523.1 30S ribosomal protein S16 -
  SOV_RS08990 (SOV_17800) - 1814551..1814778 (+) 228 WP_021167524.1 KH domain-containing protein -
  SOV_RS08995 (SOV_17810) - 1814816..1815232 (+) 417 WP_021167525.1 YlqD family protein -
  SOV_RS09000 (SOV_17820) rimM 1815204..1815737 (+) 534 WP_236614501.1 ribosome maturation factor RimM -
  SOV_RS09005 (SOV_17830) trmD 1815751..1816497 (+) 747 WP_021167527.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOV_RS09010 (SOV_17840) - 1816500..1817078 (+) 579 WP_021167528.1 RNA methyltransferase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 32796.92 Da        Isoelectric Point: 5.9813

>NTDB_id=942618 SOV_RS08970 WP_021167520.1 1811489..1812406(+) (pilA) [Sporomusa ovata DSM 2662]
MGFFDKLKAGLEKTRKSFTEKIEQLVIGYATIEDELLDDLEAVLLSADVGVPTTTKLMTEIRNGIRNKQINSPDDLKPFL
QDKINTMLLCKHHAEPIENDPPTVILIVGVNGVGKTTTIGKLANYYHESGKKVLIAAADTFRAAAIDQLEIWGQRAGTEI
IKHAEGSDPAAVAFDAVQAAKARKIDIVMIDTAGRLHTKANLMEELKKINRVIAKEIPAAPHETLLVLDATTGQNAISQA
KLFGDVVALTGVVLTKLDGTAKGGVVIAINNELSLPVKWIGVGEGVNDLRPFAAAEFAAALFSDK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=942618 SOV_RS08970 WP_021167520.1 1811489..1812406(+) (pilA) [Sporomusa ovata DSM 2662]
ATGGGGTTTTTTGATAAATTGAAAGCTGGATTAGAAAAGACGAGAAAAAGTTTTACGGAAAAAATAGAACAATTGGTTAT
CGGTTATGCTACCATTGAAGATGAATTACTGGATGATTTGGAAGCAGTGCTACTTTCTGCAGATGTCGGTGTGCCAACCA
CCACCAAATTAATGACAGAAATTCGTAATGGAATTAGAAATAAGCAAATTAATTCTCCTGATGATTTAAAACCATTTTTA
CAAGATAAAATTAATACTATGTTGCTTTGCAAACACCACGCTGAACCAATAGAAAATGATCCACCAACTGTTATACTGAT
TGTTGGAGTAAATGGAGTTGGAAAAACAACAACTATTGGTAAGTTAGCCAACTATTATCATGAATCCGGGAAAAAGGTAC
TTATTGCTGCCGCAGACACCTTCAGGGCAGCGGCAATTGATCAACTCGAAATCTGGGGACAACGGGCCGGTACGGAAATT
ATTAAGCATGCCGAAGGATCAGATCCGGCAGCAGTGGCTTTTGATGCTGTTCAGGCTGCCAAAGCCCGGAAAATTGATAT
CGTAATGATTGATACTGCCGGACGTTTGCATACCAAAGCAAATTTAATGGAAGAATTGAAGAAAATCAATAGAGTAATAG
CAAAAGAAATACCGGCGGCACCACACGAAACCCTACTTGTGCTAGATGCTACTACCGGTCAGAATGCAATTAGTCAGGCA
AAACTATTCGGTGACGTGGTTGCCCTTACTGGTGTAGTACTAACTAAATTAGATGGTACTGCTAAGGGTGGGGTAGTAAT
TGCGATTAATAATGAACTTAGTCTGCCAGTCAAATGGATAGGAGTGGGTGAAGGGGTCAATGATCTCCGGCCATTTGCTG
CTGCTGAATTTGCCGCTGCTTTGTTTTCTGACAAGTAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(102-302)

SRP54-type protein, helical bundle domain (SRP54_N)

(18-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U1KVF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.197

100

0.482