Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V8Z64_RS10400 Genome accession   NZ_CP146298
Coordinates   1993404..1994033 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella sonnei strain R16.0823     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1988404..1999033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8Z64_RS10380 (V8Z64_10370) - 1988807..1990567 (-) 1761 WP_000156526.1 Lon protease family protein -
  V8Z64_RS10385 (V8Z64_10375) matP 1990753..1991205 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V8Z64_RS10390 (V8Z64_10380) ompA 1991281..1992321 (-) 1041 WP_000750416.1 porin OmpA -
  V8Z64_RS10395 (V8Z64_10385) sulA 1992676..1993185 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V8Z64_RS10400 (V8Z64_10390) sxy/tfoX 1993404..1994033 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V8Z64_RS10405 (V8Z64_10395) yccS 1993996..1996158 (-) 2163 WP_000875023.1 YccS family putative transporter -
  V8Z64_RS10410 (V8Z64_10400) - 1996168..1996614 (-) 447 WP_001261235.1 YccF domain-containing protein -
  V8Z64_RS10415 (V8Z64_10405) helD 1996737..1998791 (+) 2055 WP_039063438.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=942597 V8Z64_RS10400 WP_000839153.1 1993404..1994033(+) (sxy/tfoX) [Shigella sonnei strain R16.0823]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=942597 V8Z64_RS10400 WP_000839153.1 1993404..1994033(+) (sxy/tfoX) [Shigella sonnei strain R16.0823]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1