Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V7R83_RS06315 Genome accession   NZ_CP146288
Coordinates   1531740..1533107 (-) Length   455 a.a.
NCBI ID   WP_040530857.1    Uniprot ID   -
Organism   Lautropia mirabilis ATCC 51599     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1526740..1538107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R83_RS06295 (V7R83_06295) - 1526932..1528119 (-) 1188 WP_005672894.1 efflux RND transporter periplasmic adaptor subunit -
  V7R83_RS06300 (V7R83_06300) hpnC 1528231..1529145 (+) 915 WP_005672895.1 squalene synthase HpnC -
  V7R83_RS06305 (V7R83_06305) hpnD 1529178..1530053 (+) 876 WP_005672896.1 presqualene diphosphate synthase HpnD -
  V7R83_RS06310 (V7R83_06310) hpnE 1530098..1531555 (+) 1458 WP_169311660.1 hydroxysqualene dehydroxylase HpnE -
  V7R83_RS06315 (V7R83_06315) radA 1531740..1533107 (-) 1368 WP_040530857.1 DNA repair protein RadA Machinery gene
  V7R83_RS06320 (V7R83_06320) alr 1533110..1534228 (-) 1119 WP_040530860.1 alanine racemase -
  V7R83_RS06325 (V7R83_06325) lplT 1534371..1535657 (+) 1287 WP_005672900.1 lysophospholipid transporter LplT -
  V7R83_RS06330 (V7R83_06330) - 1535700..1536515 (-) 816 WP_232002007.1 uracil-DNA glycosylase -
  V7R83_RS06335 (V7R83_06335) rimI 1536926..1537393 (-) 468 WP_040529729.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48396.12 Da        Isoelectric Point: 7.6337

>NTDB_id=942558 V7R83_RS06315 WP_040530857.1 1531740..1533107(-) (radA) [Lautropia mirabilis ATCC 51599]
MATAKTQFVCRECGNTTAKWLGQCPACQAWNTLEEFRLPKKDASGRRPTTGMLAETSSIALLSEVPVDTVPRLPTGLAEF
DRVLGGGMVPGSVVLIGGDPGIGKSTLLLQALALMSQNQRVLYVSGEESLAQVALRGARLGIDGSTLPMLAEVSLAHITQ
AIEQVKPAVVVIDSIQTMMSDDLQSAPGSVSQVRDCAAQLTRLAKQQGVAVVMIGHVTKEGALAGPRILEHMVDTVLYFE
GDSHSTYRLIRAIKNRFGAVNELGVFGMTDRGLKAVTNPSALFLSQHADPVSGSCVLITQEGTRPLLVEIQALVDQSAGG
APRRLCVGLDPMRLSLLLAVLNRHAGIQYHDQDVFLNAVGGVRITEPAADLAVVLAVLSSLKNRPLPQGLAVFGELGLAG
EMRPSPRGQERLREALKLGFSRVICPKANAPRKPLAGLEVIAVERIDQAIAHAWD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=942558 V7R83_RS06315 WP_040530857.1 1531740..1533107(-) (radA) [Lautropia mirabilis ATCC 51599]
ATGGCAACGGCCAAGACCCAGTTCGTCTGCCGTGAATGCGGCAACACCACGGCCAAGTGGCTGGGACAGTGCCCGGCCTG
CCAGGCCTGGAACACGCTGGAAGAATTCCGGCTGCCGAAAAAGGATGCCAGTGGCCGACGCCCGACAACGGGCATGCTGG
CCGAGACCTCCTCGATTGCGCTGCTATCAGAGGTGCCGGTGGACACGGTGCCGCGGCTGCCGACCGGGCTGGCCGAGTTC
GACCGCGTGCTGGGCGGCGGCATGGTGCCCGGTTCGGTCGTGCTGATCGGAGGCGACCCGGGCATCGGCAAGTCCACGCT
GCTGCTGCAGGCGCTGGCACTGATGTCGCAGAACCAGCGGGTCCTGTACGTGAGCGGCGAAGAGTCACTGGCACAGGTGG
CCTTGCGCGGCGCACGCCTGGGCATTGACGGCTCGACGCTGCCGATGCTGGCCGAGGTGTCGCTGGCCCACATCACGCAG
GCCATCGAGCAGGTCAAGCCGGCCGTGGTGGTCATCGACTCCATCCAGACGATGATGAGCGACGACCTGCAGTCGGCCCC
CGGCAGCGTGTCGCAGGTGCGCGACTGCGCCGCGCAGCTCACCCGGCTGGCCAAGCAGCAGGGTGTGGCGGTGGTGATGA
TCGGCCACGTGACCAAGGAAGGGGCGCTGGCCGGGCCACGCATCCTGGAGCACATGGTCGACACGGTGCTGTACTTCGAG
GGCGACAGCCACTCCACCTACCGGCTGATCCGCGCCATCAAGAACCGCTTCGGGGCCGTGAACGAGCTGGGCGTGTTCGG
CATGACCGACCGGGGGCTGAAGGCCGTCACCAACCCGTCGGCGCTCTTTCTGTCGCAGCATGCCGACCCAGTGTCGGGTT
CCTGCGTGCTGATCACCCAGGAAGGTACGCGGCCTCTGCTGGTGGAGATCCAGGCGCTGGTGGACCAGTCCGCCGGCGGC
GCACCGCGCCGGCTGTGCGTGGGCCTGGATCCGATGCGGCTGTCGCTGCTGCTGGCCGTGCTCAACCGCCATGCCGGCAT
CCAGTACCACGATCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGCGCATCACCGAGCCGGCGGCTGACCTGGCCGTCG
TGCTGGCCGTACTGTCGTCGCTGAAGAACCGGCCGCTACCGCAGGGGCTAGCCGTGTTCGGCGAGCTGGGCCTGGCCGGT
GAAATGCGCCCGTCGCCGCGCGGCCAGGAACGGCTGCGCGAGGCGCTGAAACTGGGCTTCTCGCGGGTGATCTGCCCCAA
GGCCAATGCGCCGCGCAAGCCGCTGGCCGGGCTGGAGGTCATCGCCGTGGAGCGCATCGACCAGGCCATTGCCCACGCCT
GGGACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-221)

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.565

99.56

0.484
  radA Streptococcus mitis NCTC 12261

47.253

100

0.473
  radA Streptococcus mitis SK321

47.253

100

0.473
  radA Streptococcus pneumoniae Rx1

47.253

100

0.473
  radA Streptococcus pneumoniae D39

47.253

100

0.473
  radA Streptococcus pneumoniae R6

47.253

100

0.473
  radA Streptococcus pneumoniae TIGR4

47.253

100

0.473