Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V7R82_RS09505 Genome accession   NZ_CP146287
Coordinates   2021297..2022685 (-) Length   462 a.a.
NCBI ID   WP_338542693.1    Uniprot ID   -
Organism   Abiotrophia defectiva ATCC 49176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2016297..2027685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R82_RS09485 (V7R82_09485) cysS 2016447..2017871 (-) 1425 WP_338542688.1 cysteine--tRNA ligase -
  V7R82_RS09490 (V7R82_09490) - 2017908..2018561 (-) 654 WP_338542689.1 uracil-DNA glycosylase -
  V7R82_RS09495 (V7R82_09495) gltX 2018646..2020118 (-) 1473 WP_338542690.1 glutamate--tRNA ligase -
  V7R82_RS09500 (V7R82_09500) - 2020135..2021253 (-) 1119 WP_291427630.1 PIN/TRAM domain-containing protein -
  V7R82_RS09505 (V7R82_09505) radA 2021297..2022685 (-) 1389 WP_338542693.1 DNA repair protein RadA Machinery gene
  V7R82_RS09510 (V7R82_09510) - 2022722..2023288 (-) 567 WP_338542694.1 dUTP diphosphatase -
  V7R82_RS09515 (V7R82_09515) ugpC 2023523..2024635 (+) 1113 WP_338542696.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  V7R82_RS09520 (V7R82_09520) - 2024823..2026280 (+) 1458 WP_311466476.1 alpha-amylase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50746.40 Da        Isoelectric Point: 6.7654

>NTDB_id=942549 V7R82_RS09505 WP_338542693.1 2021297..2022685(-) (radA) [Abiotrophia defectiva ATCC 49176]
MAKKKVSYECMACGYESAKYLGKCPNCGAWNQMEEQIVQSTIKTEKSQFKVLTQRGEGANRAQRLEEITYKAETRTHTNF
QEFDRVLGGGVVAGSLVLIGGDPGIGKSTLLLQVSIQLANLGQTVLYVSGEESLSQIKMRAERLSLKDSHFYLLSETDLA
VIAGEVQRIAPDILIIDSIQTMQLADHTGVAGSVSQLREATAILMRIAKDNNIATFIVGHVTKEGNIAGPRMLEHMVDTV
LYFEGERHNRFRVLRAVKNRFGSTHELGVFEMLEAGLEEVTNPSELFLEERLAGATGSTVVASIEGTRPILAEIQSLMTP
TVYGTAKRTSSGIDYQRVSLLLAVMEKHCGLLVQNQDAFFKITGGVKLDEPAIDLAIAVSIASSYWNQATKIEDCFIGEI
GLTGEIRRVSQIKERLKEAAKLGFKRAYIPKNNLAGLDQTIAIEIVPVATIQEAIHKVFPRQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=942549 V7R82_RS09505 WP_338542693.1 2021297..2022685(-) (radA) [Abiotrophia defectiva ATCC 49176]
ATGGCCAAGAAAAAAGTAAGCTACGAATGTATGGCCTGCGGCTATGAATCGGCTAAGTATCTGGGTAAGTGTCCTAATTG
TGGCGCTTGGAATCAGATGGAAGAACAAATTGTCCAATCGACCATTAAGACTGAGAAAAGCCAGTTCAAGGTTTTGACCC
AGCGCGGTGAAGGTGCCAACCGGGCTCAACGCCTAGAAGAAATCACCTACAAGGCTGAAACGCGGACCCATACCAATTTC
CAAGAGTTCGACCGGGTCTTGGGGGGCGGGGTGGTAGCCGGCAGTTTGGTTCTGATTGGGGGCGATCCTGGGATTGGTAA
GTCTACCCTCTTGCTCCAGGTCTCGATTCAACTGGCTAATCTAGGTCAGACCGTCCTCTATGTTTCTGGGGAAGAGAGTC
TCTCCCAAATTAAAATGCGGGCGGAACGCCTATCACTCAAGGACAGTCATTTCTATCTCTTATCGGAGACGGACTTAGCA
GTTATTGCTGGCGAAGTTCAGCGTATTGCTCCAGACATTTTGATTATCGACTCTATCCAGACCATGCAACTGGCAGATCA
TACTGGGGTGGCGGGAAGTGTTTCCCAATTGCGGGAAGCTACCGCTATCTTAATGCGGATTGCCAAGGATAATAATATTG
CGACCTTTATTGTCGGTCACGTGACCAAGGAGGGCAATATTGCAGGGCCTCGGATGTTGGAACACATGGTGGATACCGTT
CTCTACTTTGAGGGCGAGCGCCATAATCGTTTCCGGGTCTTGCGAGCCGTGAAAAATCGCTTTGGCTCCACACATGAGTT
AGGGGTCTTTGAAATGCTGGAAGCAGGTTTGGAAGAAGTAACCAACCCTTCAGAACTCTTCCTGGAAGAACGTTTGGCTG
GCGCGACGGGTTCGACTGTTGTGGCTTCGATTGAAGGGACGCGGCCGATTTTGGCGGAAATCCAGTCTCTGATGACTCCA
ACTGTCTATGGGACTGCCAAACGCACCTCCTCGGGGATTGACTATCAACGCGTGTCACTGCTCTTGGCAGTTATGGAAAA
GCACTGCGGTCTGCTGGTGCAAAATCAGGATGCCTTCTTCAAGATTACAGGCGGCGTTAAATTAGACGAGCCGGCAATTG
ATTTGGCCATTGCAGTCAGCATCGCGTCTAGTTATTGGAATCAGGCCACTAAGATCGAAGATTGCTTCATCGGCGAAATT
GGTCTGACGGGGGAAATCCGACGGGTTAGCCAAATCAAGGAGCGCCTCAAGGAAGCTGCCAAACTGGGCTTTAAGCGAGC
CTATATTCCCAAAAATAATCTAGCAGGCCTGGATCAGACAATAGCAATCGAAATTGTGCCAGTGGCCACTATCCAGGAAG
CCATTCATAAGGTCTTCCCCCGCCAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(82-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(371-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

62.309

99.351

0.619
  radA Streptococcus mitis NCTC 12261

62.309

99.351

0.619
  radA Streptococcus pneumoniae Rx1

62.309

99.351

0.619
  radA Streptococcus pneumoniae D39

62.309

99.351

0.619
  radA Streptococcus pneumoniae R6

62.309

99.351

0.619
  radA Streptococcus pneumoniae TIGR4

62.309

99.351

0.619
  radA Bacillus subtilis subsp. subtilis str. 168

58.772

98.701

0.58