Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V7R82_RS07710 Genome accession   NZ_CP146287
Coordinates   1668690..1670501 (-) Length   603 a.a.
NCBI ID   WP_338542289.1    Uniprot ID   -
Organism   Abiotrophia defectiva ATCC 49176     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1663690..1675501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R82_RS07690 (V7R82_07690) - 1664339..1665532 (-) 1194 WP_338542282.1 pyridoxal phosphate-dependent aminotransferase -
  V7R82_RS07695 (V7R82_07695) - 1665555..1666592 (-) 1038 WP_338542283.1 glycosyltransferase -
  V7R82_RS07700 (V7R82_07700) - 1666597..1667826 (-) 1230 WP_338542285.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  V7R82_RS07705 (V7R82_07705) - 1667840..1668532 (-) 693 WP_338542287.1 sugar transferase -
  V7R82_RS07710 (V7R82_07710) pepF 1668690..1670501 (-) 1812 WP_338542289.1 oligoendopeptidase F Regulator
  V7R82_RS07715 (V7R82_07715) - 1670644..1671750 (-) 1107 WP_338542291.1 competence protein CoiA family protein -
  V7R82_RS07720 (V7R82_07720) rhaD 1671901..1672701 (-) 801 WP_338542293.1 rhamnulose-1-phosphate aldolase -
  V7R82_RS07725 (V7R82_07725) - 1672705..1674057 (-) 1353 WP_070756280.1 PTS transporter subunit IIC -
  V7R82_RS07730 (V7R82_07730) - 1674108..1674386 (-) 279 WP_338542295.1 PTS sugar transporter subunit IIB -
  V7R82_RS07735 (V7R82_07735) - 1674402..1674863 (-) 462 WP_338542297.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68920.22 Da        Isoelectric Point: 4.6333

>NTDB_id=942543 V7R82_RS07710 WP_338542289.1 1668690..1670501(-) (pepF) [Abiotrophia defectiva ATCC 49176]
MSEETLRTREQQPEAFTWDLTSLYADAEQWQAEYDKAEAMVVDLASFKGTLNQGGAHLVTVIEAIQAACLVVERLYAYAH
LTYDQDSTNSASQVLNARAMQLYSKLAEAIAFFDPELLSLPSETLEAYFQETPELDFYRQYLDDITRGRAHTLSASEETL
LAQLGEIFSSSYSTFSLLDNADFVFPTIEGPEGQAVQLTHGTYGRLLESTDRRVRRDTFQQYYTVYNQFKNTLANVLSTN
IKTDNYKAKVRHYPSARAAALFRNNVPESVYDTLLETVGDHLGLLHRYTALRKDLLGLDSLEMYDLYTPLLGDAPIKFSQ
TEARDIVMEALAPMGPDYLEIMAKAFDERWIDWYENKGKRSGAYSGGMYDSKPYVLLNWQDNINWLFTLVHELGHSAHSY
LSRTNQPYVYSDYSIFLAEIASTTNENLLTDYLLKKYQDPQIRLYVLNHFLDGVKGTVFRQTQFAEFEHFMHQADAEGTP
LTHEFLTENYRKLNAKYYGPSVNSDSEIGLEWARIPHFYYNYYVFQYATGFSAATFFADKIAAGDSALLEAYKGFLKSGC
SLYPIDTMKKAGLDMTQRDYIEATLKVFEARLNEFEALLAETK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=942543 V7R82_RS07710 WP_338542289.1 1668690..1670501(-) (pepF) [Abiotrophia defectiva ATCC 49176]
ATGTCAGAAGAAACATTACGCACGCGTGAACAACAACCTGAAGCCTTTACCTGGGACCTGACTTCGCTCTATGCGGACGC
AGAACAATGGCAGGCTGAGTATGACAAGGCAGAAGCCATGGTGGTGGACTTAGCATCATTCAAAGGCACCCTGAATCAAG
GTGGCGCCCACTTAGTGACTGTTATTGAGGCTATTCAAGCGGCTTGCTTAGTGGTTGAGCGTCTCTACGCCTATGCCCAC
CTAACTTATGATCAAGATTCAACCAATAGTGCCTCTCAAGTTCTCAATGCTCGAGCTATGCAACTATACAGTAAGTTGGC
AGAAGCCATTGCCTTCTTCGACCCTGAACTTTTGAGCTTGCCATCCGAAACCCTAGAGGCTTACTTCCAAGAAACACCTG
AATTAGATTTCTACCGTCAGTACTTGGATGATATTACCCGTGGGCGTGCCCACACCTTGTCGGCTTCCGAGGAGACCCTC
TTAGCGCAACTAGGTGAGATTTTCAGCAGCTCTTATTCTACTTTCTCCTTGTTGGACAATGCTGACTTTGTCTTCCCAAC
CATTGAAGGGCCGGAAGGGCAAGCGGTACAATTAACACACGGGACCTATGGTCGTCTCTTGGAAAGCACTGACCGCCGTG
TGCGCCGCGATACTTTCCAACAGTACTACACGGTCTACAACCAGTTCAAGAATACCTTGGCCAATGTCTTATCTACCAAT
ATTAAGACTGACAACTACAAGGCCAAAGTCCGTCACTACCCGTCTGCACGGGCTGCTGCCCTCTTCCGCAATAATGTGCC
GGAATCCGTCTATGATACCTTGTTAGAGACAGTGGGCGACCACTTGGGCTTACTCCACCGTTATACCGCCTTGCGTAAGG
ATCTCTTAGGTCTAGATTCGCTAGAAATGTATGACCTTTATACGCCGCTTCTTGGGGATGCCCCAATCAAGTTCAGCCAA
ACGGAAGCGCGGGATATCGTGATGGAAGCTCTGGCGCCAATGGGACCAGATTATTTGGAAATCATGGCTAAGGCCTTCGA
CGAACGCTGGATTGACTGGTATGAGAACAAGGGTAAACGCTCAGGCGCATACTCAGGCGGGATGTATGACAGCAAGCCTT
ATGTCCTACTCAACTGGCAAGACAATATTAATTGGCTCTTCACTTTGGTTCATGAGTTGGGTCACAGTGCTCATTCTTAC
TTATCTCGCACCAACCAACCTTATGTTTACAGTGATTATTCGATTTTCTTGGCTGAGATTGCCTCAACTACTAATGAAAA
TCTCTTGACGGACTACCTCTTGAAGAAATATCAAGATCCTCAAATCCGTCTCTATGTCCTTAACCACTTCTTAGATGGGG
TTAAGGGAACGGTCTTCCGTCAAACCCAATTTGCGGAATTCGAGCACTTCATGCACCAAGCAGATGCCGAAGGAACCCCA
TTAACTCACGAATTCTTGACGGAGAACTACCGCAAACTGAATGCTAAGTACTACGGACCAAGCGTTAACTCTGACTCTGA
AATTGGGCTAGAGTGGGCTCGAATTCCACACTTCTATTACAACTATTATGTCTTCCAATATGCGACTGGCTTCTCTGCGG
CTACCTTCTTCGCAGACAAGATTGCCGCTGGCGACAGTGCTTTACTTGAGGCCTACAAGGGCTTCCTTAAGTCAGGCTGC
AGCCTCTATCCAATCGACACCATGAAGAAGGCTGGGTTGGATATGACGCAACGTGACTATATCGAAGCAACACTCAAGGT
CTTCGAAGCACGCTTGAACGAGTTTGAAGCCCTCTTGGCAGAAACTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(206-585)

Oligopeptidase F (Peptidase_M3_N)

(116-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.239

98.01

0.483