Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V7R82_RS02885 Genome accession   NZ_CP146287
Coordinates   599646..601439 (+) Length   597 a.a.
NCBI ID   WP_338543287.1    Uniprot ID   -
Organism   Abiotrophia defectiva ATCC 49176     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 594646..606439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R82_RS02865 (V7R82_02865) - 595563..596327 (-) 765 WP_338543280.1 hypothetical protein -
  V7R82_RS02870 (V7R82_02870) - 596311..597249 (-) 939 WP_338543282.1 ATP-binding cassette domain-containing protein -
  V7R82_RS02875 (V7R82_02875) - 597439..597894 (+) 456 WP_338543284.1 MarR family transcriptional regulator -
  V7R82_RS02880 (V7R82_02880) rcrP 597887..599656 (+) 1770 WP_338543286.1 ABC transporter ATP-binding protein Regulator
  V7R82_RS02885 (V7R82_02885) rcrQ 599646..601439 (+) 1794 WP_338543287.1 ABC transporter ATP-binding protein Regulator
  V7R82_RS02890 (V7R82_02890) - 601568..602170 (+) 603 WP_338543288.1 FGGY-family carbohydrate kinase -
  V7R82_RS02895 (V7R82_02895) rhaA 602181..603443 (+) 1263 WP_070755894.1 L-rhamnose isomerase -
  V7R82_RS02900 (V7R82_02900) rhaD 603457..604269 (+) 813 WP_338543290.1 rhamnulose-1-phosphate aldolase -
  V7R82_RS02905 (V7R82_02905) - 604415..605293 (-) 879 WP_291427422.1 YitT family protein -
  V7R82_RS02910 (V7R82_02910) - 605431..605982 (+) 552 WP_338543293.1 hypothetical protein -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 65443.90 Da        Isoelectric Point: 5.0562

>NTDB_id=942527 V7R82_RS02885 WP_338543287.1 599646..601439(+) (rcrQ) [Abiotrophia defectiva ATCC 49176]
MANKTSKPSLFKGIKPYIQGFQLPLVLALIGATIFSMITVYGPRKLEEMTNLIGQGMSGNMDLKAISAVGFLLAGLYAFG
AVINYLQGFIITTMIQRLSQRLRRAIATKINRLPLAYFDSHSQGDTLSRVTNDVDTVGQSLNQSLANVISSVIMIIAVLI
MMFTANVILSLVTVVSVFVGFILIMFIGMRAQAFFKAQQVNLAAVNGFVEETYSGHNVVTSYNAVPESLAQFAKLNGQLH
DSIWKSQFISGIMMPLMIFIGNFAYVLVIIVGAILALQEGSGVTMGTIVAFMVYVRIFGQPISQLAQGMTSLQQAGAAMS
RVSEFLNEEEMADDHQLPQALTDIKGQVTFDQVTFGYWPDQTIINDFTAQARPGKKIAIVGPTGAGKTTIVNLLMKFYEI
NQGTIAIDGVDLAQMKRSEVHDAFAMVLQDTWLFEGTIKENLIFNQTGISDDQVVEAAKAAGVHHYIMTLPKAYDTVLDD
TVTLSVGQKQLMTIARALLKDAPLLILDEATSSVDTRTEELIQQAMDTLMEGRTSFVIAHRLSTIKNADYILVMQEGRII
EQGNHQELMAQGGFYADLYNSQFDKNSSGMDFEELLA

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=942527 V7R82_RS02885 WP_338543287.1 599646..601439(+) (rcrQ) [Abiotrophia defectiva ATCC 49176]
ATGGCCAATAAGACATCCAAACCATCCCTCTTTAAGGGAATCAAACCTTATATTCAAGGCTTTCAACTGCCCTTGGTCTT
GGCTCTGATTGGGGCGACCATTTTCAGTATGATTACGGTCTATGGGCCACGTAAGTTGGAAGAAATGACCAACCTGATTG
GCCAAGGCATGTCAGGCAATATGGACCTCAAGGCCATTTCAGCTGTGGGCTTCTTGCTAGCCGGGCTCTATGCCTTTGGG
GCGGTGATTAACTACCTACAAGGCTTCATTATCACCACCATGATTCAGCGTCTGTCCCAGCGGCTGCGCCGGGCTATCGC
GACTAAGATTAACCGTCTACCCTTGGCCTACTTCGATAGTCACTCCCAAGGGGATACCCTGTCACGGGTGACCAACGATG
TGGATACTGTCGGCCAATCCCTTAACCAGAGTCTGGCCAATGTGATTTCTTCGGTCATCATGATTATCGCGGTTCTGATT
ATGATGTTCACCGCCAATGTCATCCTATCGCTAGTGACGGTGGTTTCCGTCTTCGTGGGCTTTATCCTGATTATGTTTAT
CGGCATGCGGGCCCAAGCCTTCTTCAAGGCCCAACAAGTCAACTTGGCGGCCGTCAATGGCTTCGTAGAGGAAACTTATT
CAGGTCACAATGTGGTCACTAGCTACAATGCTGTGCCTGAGTCTCTGGCCCAGTTCGCCAAGCTCAATGGCCAACTCCAT
GACAGCATCTGGAAGTCTCAATTTATCTCGGGCATTATGATGCCGCTTATGATTTTCATTGGGAACTTCGCCTACGTCCT
GGTTATTATCGTTGGGGCTATCTTGGCCTTGCAGGAGGGCAGTGGCGTGACCATGGGGACCATCGTGGCCTTTATGGTCT
ATGTGCGGATCTTCGGTCAACCCATTTCCCAACTGGCCCAAGGCATGACCTCCTTGCAACAAGCGGGGGCGGCCATGAGT
CGGGTCTCCGAATTCCTTAATGAAGAAGAAATGGCGGATGACCACCAACTGCCACAGGCCTTGACCGACATTAAGGGGCA
GGTCACCTTCGACCAGGTCACCTTTGGTTATTGGCCTGATCAAACCATCATTAATGACTTTACGGCCCAAGCCCGCCCTG
GTAAGAAGATTGCCATTGTAGGGCCGACTGGGGCAGGTAAGACCACCATTGTTAACCTGCTTATGAAGTTCTATGAAATC
AACCAGGGGACCATCGCCATTGATGGCGTGGACCTGGCCCAAATGAAACGGTCGGAAGTCCATGATGCCTTCGCCATGGT
CCTACAGGACACCTGGCTCTTTGAAGGGACCATCAAGGAAAACTTGATCTTCAACCAGACTGGCATTAGTGACGACCAGG
TGGTCGAGGCGGCCAAGGCGGCCGGCGTCCACCACTATATTATGACCCTGCCTAAGGCTTACGATACGGTCCTGGATGAC
ACGGTCACCTTGTCGGTCGGGCAAAAGCAGCTCATGACCATTGCCCGCGCCTTGCTTAAGGATGCACCACTGCTGATCTT
GGACGAGGCCACTTCTTCGGTGGATACCCGGACCGAAGAGCTGATTCAACAGGCCATGGATACCCTTATGGAAGGGCGGA
CTTCCTTCGTCATCGCCCACCGTCTGTCGACTATTAAAAATGCCGACTATATCCTGGTCATGCAGGAAGGTCGCATTATC
GAACAAGGTAACCACCAGGAGCTCATGGCTCAAGGCGGCTTCTATGCTGACCTCTATAACAGCCAGTTCGATAAGAATTC
TAGTGGCATGGACTTTGAAGAGCTCTTGGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(365-512)

ABC transporter transmembrane region (ABC_membrane)

(34-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

64.151

97.655

0.626