Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V7R82_RS02880 Genome accession   NZ_CP146287
Coordinates   597887..599656 (+) Length   589 a.a.
NCBI ID   WP_338543286.1    Uniprot ID   -
Organism   Abiotrophia defectiva ATCC 49176     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 592887..604656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R82_RS02865 (V7R82_02865) - 595563..596327 (-) 765 WP_338543280.1 hypothetical protein -
  V7R82_RS02870 (V7R82_02870) - 596311..597249 (-) 939 WP_338543282.1 ATP-binding cassette domain-containing protein -
  V7R82_RS02875 (V7R82_02875) - 597439..597894 (+) 456 WP_338543284.1 MarR family transcriptional regulator -
  V7R82_RS02880 (V7R82_02880) rcrP 597887..599656 (+) 1770 WP_338543286.1 ABC transporter ATP-binding protein Regulator
  V7R82_RS02885 (V7R82_02885) rcrQ 599646..601439 (+) 1794 WP_338543287.1 ABC transporter ATP-binding protein Regulator
  V7R82_RS02890 (V7R82_02890) - 601568..602170 (+) 603 WP_338543288.1 FGGY-family carbohydrate kinase -
  V7R82_RS02895 (V7R82_02895) rhaA 602181..603443 (+) 1263 WP_070755894.1 L-rhamnose isomerase -
  V7R82_RS02900 (V7R82_02900) rhaD 603457..604269 (+) 813 WP_338543290.1 rhamnulose-1-phosphate aldolase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 64898.58 Da        Isoelectric Point: 5.2597

>NTDB_id=942526 V7R82_RS02880 WP_338543286.1 597887..599656(+) (rcrP) [Abiotrophia defectiva ATCC 49176]
MFKLIKRLSAREWGMVGLTVAFIFLAVYLDLEVPSYMKEVATLLQTPGVGLDQLMGPGALMLGLSLASFASLVMVGFLAA
RLAASYTTRLRSDIYSQVLSYSDAEIKRFSIPSLLTRTTNDISQIQLLITMGLQVIVRGPIMAIWAMTKIVGKSEAWLWA
VGVAILIIILMTVVLMTLAFPKQAVIQKLTDKLNAVTRESLMGIRVIRAYNAEDYQDAKFEATNNEVTRLNLFVNNLMAI
FNPIMSGISSGLTLAIYWIGAYLIASANLFDKVGLFSEMIVFMSYAMQIVIGFLLMGIIFFILPRSLVAAGRINQVLELE
PSIHSPDQGQSPDPSLKGQVTFQNVTFRYAQEAEPVIQDVSFQAQAGQTVAFIGSTGSGKSTLVNLIPRFYDVSEGQILV
DGVNVADYDLTELRKRVGYIPQKAVLFSGDIQSNLDMGESLESPLTEAKMWQALELAQAKDFVEAKEGGLAEHVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILREALTKETAHMTKLIVAQRISTIMEADLILVLDQGRVVGQG
THKELLKDNAVYREIAYSQLSKEELEDGQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=942526 V7R82_RS02880 WP_338543286.1 597887..599656(+) (rcrP) [Abiotrophia defectiva ATCC 49176]
ATGTTTAAATTAATTAAGCGACTCAGCGCCCGTGAATGGGGGATGGTGGGTCTTACCGTGGCCTTCATCTTCCTAGCCGT
CTACTTGGACTTAGAAGTTCCAAGTTATATGAAGGAAGTGGCCACACTCTTACAAACACCAGGCGTGGGCCTAGATCAGT
TAATGGGTCCAGGAGCCCTCATGTTGGGCCTATCCCTAGCTAGTTTCGCCAGCCTAGTCATGGTGGGCTTCCTAGCCGCC
CGTCTAGCCGCTAGCTATACCACCCGTTTGCGGTCGGACATCTATAGCCAAGTCCTCAGCTATTCAGATGCTGAAATCAA
GCGTTTCAGTATTCCCTCTCTCTTGACCCGGACCACTAATGACATCAGCCAGATTCAGTTGCTGATTACCATGGGCCTCC
AGGTCATCGTTCGCGGTCCCATTATGGCTATTTGGGCCATGACCAAGATTGTGGGCAAGTCCGAGGCCTGGCTTTGGGCA
GTGGGGGTAGCGATCTTAATCATCATTTTAATGACTGTAGTCCTCATGACCTTGGCCTTTCCTAAGCAAGCGGTCATTCA
GAAATTAACTGATAAGCTCAATGCCGTTACCCGCGAGAGTCTGATGGGGATTCGGGTCATTCGGGCCTACAATGCGGAGG
ACTACCAAGATGCTAAGTTCGAAGCCACTAACAATGAAGTGACCCGACTCAACCTCTTCGTTAACAACCTCATGGCTATC
TTCAACCCTATTATGTCGGGGATTTCCTCAGGTTTGACCCTGGCCATCTATTGGATCGGGGCCTATCTCATTGCCTCCGC
TAACTTATTTGATAAAGTTGGTCTCTTCAGTGAAATGATTGTCTTCATGTCCTACGCTATGCAGATTGTCATCGGCTTCC
TCTTGATGGGGATTATCTTCTTCATCCTGCCCCGTAGCTTGGTGGCAGCGGGCCGAATCAATCAAGTCCTAGAACTAGAG
CCAAGCATTCATTCACCAGACCAAGGCCAGTCTCCAGACCCAAGTCTCAAGGGCCAAGTCACCTTCCAAAATGTGACCTT
CCGCTATGCCCAAGAAGCCGAGCCGGTCATCCAAGACGTGTCCTTCCAGGCTCAAGCTGGTCAAACCGTGGCCTTTATCG
GCTCAACCGGTTCAGGTAAATCCACCCTGGTTAACTTGATTCCACGCTTCTACGATGTGTCAGAAGGCCAGATTCTGGTC
GACGGCGTCAACGTGGCCGACTACGACTTGACTGAACTGCGCAAGCGGGTAGGTTACATTCCTCAAAAGGCCGTCCTCTT
CTCAGGCGACATCCAGTCCAACCTGGATATGGGGGAAAGCTTAGAAAGCCCACTGACGGAAGCCAAGATGTGGCAGGCCC
TTGAATTGGCTCAAGCTAAGGACTTTGTAGAGGCCAAGGAAGGCGGCCTAGCCGAGCATGTGGCTCAGGGCGGGACCAAC
TTCTCGGGTGGTCAACGCCAACGTCTGGCCATTGCCCGGGCTCTGGCACGTAAGCCAGAAATCTTAATCTTTGACGATTC
CTTCTCAGCCTTGGACTATAAGACCGACCGTATCTTGCGTGAGGCCTTGACCAAGGAGACGGCCCACATGACTAAGTTGA
TTGTGGCTCAACGGATTTCCACCATTATGGAGGCTGACTTGATTCTGGTCCTAGACCAAGGTCGAGTGGTCGGCCAGGGG
ACCCACAAGGAATTGCTCAAGGACAACGCAGTCTATCGCGAAATTGCTTACTCTCAATTATCCAAGGAGGAATTAGAAGA
TGGCCAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(54-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

63.894

100

0.652