Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACE38K_RS18630 Genome accession   NZ_CP170101
Coordinates   3796781..3797773 (+) Length   330 a.a.
NCBI ID   WP_000224456.1    Uniprot ID   -
Organism   Escherichia coli BL21     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3791781..3802773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE38K_RS18605 rbsD 3792088..3792324 (+) 237 Protein_3639 D-ribose pyranase -
  ACE38K_RS18610 rbsA 3792332..3793837 (+) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  ACE38K_RS18615 rbsC 3793842..3794807 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  ACE38K_RS18620 rbsB 3794832..3795722 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACE38K_RS18625 rbsK 3795848..3796777 (+) 930 WP_012767772.1 ribokinase -
  ACE38K_RS18630 cytR 3796781..3797773 (+) 993 WP_000224456.1 ribose operon transcriptional repressor RbsR Regulator
  ACE38K_RS18635 mdtD 3797739..3799166 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  ACE38K_RS18640 yieP 3799189..3799881 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36563.82 Da        Isoelectric Point: 5.0711

>NTDB_id=942497 ACE38K_RS18630 WP_000224456.1 3796781..3797773(+) (cytR) [Escherichia coli BL21]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGDSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=942497 ACE38K_RS18630 WP_000224456.1 3796781..3797773(+) (cytR) [Escherichia coli BL21]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTGATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361