Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6617_RS09680 Genome accession   NZ_CP146275
Coordinates   1965807..1966283 (+) Length   158 a.a.
NCBI ID   WP_090832385.1    Uniprot ID   -
Organism   Pelagibacterium nitratireducens strain ZH15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1960807..1971283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6617_RS09660 (V6617_09660) - 1960977..1961126 (-) 150 WP_338606778.1 DUF1127 domain-containing protein -
  V6617_RS09665 (V6617_09665) - 1961268..1961918 (+) 651 WP_338606779.1 glutathione S-transferase family protein -
  V6617_RS09670 (V6617_09670) - 1961984..1962133 (-) 150 WP_338606780.1 DUF1127 domain-containing protein -
  V6617_RS09675 (V6617_09675) uvrA 1962597..1965488 (-) 2892 WP_338606781.1 excinuclease ABC subunit UvrA -
  V6617_RS09680 (V6617_09680) ssb 1965807..1966283 (+) 477 WP_090832385.1 single-stranded DNA-binding protein Machinery gene
  V6617_RS09685 (V6617_09685) - 1966341..1966865 (-) 525 WP_338606782.1 hypothetical protein -
  V6617_RS09690 (V6617_09690) - 1966849..1969107 (-) 2259 WP_338606783.1 efflux RND transporter permease subunit -
  V6617_RS09695 (V6617_09695) - 1969202..1969636 (-) 435 WP_338606784.1 Lrp/AsnC family transcriptional regulator -
  V6617_RS09700 (V6617_09700) rocF 1969754..1970680 (+) 927 WP_338606785.1 arginase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17281.15 Da        Isoelectric Point: 5.9617

>NTDB_id=942471 V6617_RS09680 WP_090832385.1 1965807..1966283(+) (ssb) [Pelagibacterium nitratireducens strain ZH15]
MSGSVNKVILVGNLGADPEVRSLPNGNPVVNLRIATSERWRDRNSGEPREKTEWHRVVIFSEGLAKVAQNYLKKGAKVYI
EGQLQTRKWEKDGQDQYTTEIVLQGFNSTLTMLDGRGEGGGDRDSGGYGGGSRQVENRGRPSSAPAFEPGGMDDDIPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=942471 V6617_RS09680 WP_090832385.1 1965807..1966283(+) (ssb) [Pelagibacterium nitratireducens strain ZH15]
ATGTCGGGAAGCGTGAACAAAGTTATTCTGGTGGGCAATCTGGGTGCCGACCCTGAAGTGCGGTCGCTGCCCAATGGCAA
CCCCGTGGTCAATCTGCGCATCGCGACGTCCGAGCGCTGGCGCGACCGCAATTCCGGCGAGCCACGCGAAAAGACCGAAT
GGCATCGCGTGGTGATCTTCAGCGAGGGATTGGCCAAGGTGGCCCAGAACTACCTCAAGAAGGGCGCCAAGGTTTATATC
GAGGGCCAGCTCCAGACCCGGAAATGGGAAAAGGACGGCCAGGACCAGTACACGACCGAGATCGTGTTGCAGGGGTTCAA
TTCGACGCTGACCATGCTCGACGGGCGCGGTGAAGGTGGCGGCGACCGCGATAGCGGCGGCTATGGCGGCGGCAGCCGAC
AGGTCGAAAATCGCGGGCGGCCGTCCAGCGCTCCAGCCTTCGAGCCGGGGGGCATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.312

100

0.557
  ssb Vibrio cholerae strain A1552

50.289

100

0.551
  ssb Neisseria gonorrhoeae MS11

43.017

100

0.487
  ssb Neisseria meningitidis MC58

41.899

100

0.475