Detailed information NTG0942471

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACE38K_RS13240
• Genome accession: NZ_CP170101
• Coordinates: 2674801..2675793 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli BL21
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2669801..2680793

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACE38K_RS13220	otnK	2670576..2671838 (+)	1263	WP_000590371.1	3-oxo-tetronate kinase	-
ACE38K_RS13225	ygbL	2671835..2672473 (+)	639	WP_001278994.1	aldolase	-
ACE38K_RS13230	ygbM	2672478..2673254 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ACE38K_RS13235	ygbN	2673343..2674707 (+)	1365	WP_000104459.1	GntP family transporter	-
ACE38K_RS13240	rpoS	2674801..2675793 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACE38K_RS13245	nlpD	2675856..2676950 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACE38K_RS13250	pcm	2677135..2677761 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACE38K_RS13255	surE	2677755..2678516 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACE38K_RS13260	truD	2678497..2679546 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACE38K_RS13265	ispF	2679543..2680022 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACE38K_RS13270	ispD	2680022..2680732 (-)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=942471 ACE38K_RS13240 WP_000081550.1 2674801..2675793(-) (rpoS) [Escherichia coli BL21]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=942471 ACE38K_RS13240 WP_000081550.1 2674801..2675793(-) (rpoS) [Escherichia coli BL21]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715