Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8631_RS06625 Genome accession   NZ_AP028387
Coordinates   1258082..1258576 (+) Length   164 a.a.
NCBI ID   WP_002855991.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11353     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253082..1263576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8631_RS06610 (B11353_13380) - 1254468..1255646 (-) 1179 WP_002882219.1 metal-dependent hydrolase -
  R8631_RS06615 (B11353_13390) gpsA 1255656..1256552 (-) 897 WP_074468983.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8631_RS06620 (B11353_13400) gatB 1256549..1257967 (-) 1419 WP_308042893.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8631_RS06625 (B11353_13410) luxS 1258082..1258576 (+) 495 WP_002855991.1 S-ribosylhomocysteine lyase Regulator
  R8631_RS06630 (B11353_13420) - 1258887..1259879 (+) 993 WP_002882217.1 isopenicillin N synthase family dioxygenase -
  R8631_RS06635 (B11353_13430) - 1259890..1260660 (+) 771 WP_002882216.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8631_RS06640 (B11353_13440) metE 1260672..1262936 (+) 2265 WP_308042892.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18258.18 Da        Isoelectric Point: 5.9947

>NTDB_id=94240 R8631_RS06625 WP_002855991.1 1258082..1258576(+) (luxS) [Campylobacter jejuni strain BCH-11353]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCVPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=94240 R8631_RS06625 WP_002855991.1 1258082..1258576(+) (luxS) [Campylobacter jejuni strain BCH-11353]
ATGCCATTATTAGATAGTTTTAAAGTTGATCATACCAAAATGCCAGCGCCCGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCGTACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGTGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment